Epigenetics & Molecular Carcinogenesis

Filter
Conference contribution

Search results

  • 2015

    CSA-RRBS: A comprehensive streamlined analysis of reduced representation bisulfite sequencing (RRBS) data

    Gong, T., Gaddis, S. S., Lu, Y., Kondo, K., Zhao, H., Shen, J., Marcelo Aldaz, C. & Estecio, M. R., 2015, Proceedings of the 7th International Conference on Bioinformatics and Computational Biology, BICOB 2015. Haspel, N. & Saeed, F. (eds.). The International Society for Computers and Their Applications (ISCA), p. 105-110 6 p. (Proceedings of the 7th International Conference on Bioinformatics and Computational Biology, BICOB 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2012

    A Bayesian model for SNP discovery based on next-generation sequencing data

    Xu, Y., Zheng, X., Yuan, Y., Estecio, M. R., Issa, J. P., Ji, Y. & Liang, S., 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2012. p. 42-45 4 p. 6507722. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
  • 2009

    Analysis of epigenetic modifications by next generation sequencing

    Liang, S., Lu, Y., Jelinek, J., Estecio, M., Li, H. & Issa, J. P., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 6730 1 p. 5332853. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    6 Scopus citations

  • A systems biology approach to identify affected regulatory and signaling circuits in protein interaction networks

    Gong, T., Xuan, J., Reggins, R. B. & Clarke, R., 2009, Proceedings - 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, IJCBS 2009. p. 297-300 4 p. 5260659. (Proceedings - 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, IJCBS 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations
  • 2008

    Exploring transcriptional modules through integrative gene clustering guided by transcription factor binding information

    Gong, T., Xuan, J., Riggins, R. B., Wang, Y., Hoffman, E. P. & Clarke, R., 2008, Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008. p. 191-197 7 p. (Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Sparse decomposition of gene expression data to infer transcriptional modules guided by motif information

    Gong, T., Xuan, J., Chen, L., Riggins, R. B., Wang, Y., Hoffman, E. P. & Clarke, R., 2008, Bioinformatics Research and Applications - Fourth International Symposium, ISBRA 2008, Proceedings. p. 244-255 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4983 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
  • 2007

    Multiple sequence alignment based on profile alignment of intermediate sequences

    Lu, Y. & Sze, S. H., 2007, Research in Computational Molecular Biology - 11th Annual International Conference, RECOMB 2007, Proceedings. Springer Verlag, p. 283-295 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4453 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations
  • 2006

    Composite gene module discovery using non-negative independent component analysis

    Gong, T., Xuan, J., Zhu, Y., Li, H., Clarke, R., Hoffman, E. P. & Wang, Y., 2006, 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006. 4015835. (2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Latent variable and nICA modeling of pathway gene module composite

    Gong, T., Zhu, Y., Xuan, J., Li, H., Clarke, R., Hoffman, E. P. & Wang, Y., 2006, 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'06. p. 5872-5875 4 p. 4029667. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations

  • ModVis: An information visualization tool for gene module discovery

    Molineaux, J., Xuan, J., Gong, T., Zhu, Y., Hoffman, E., Clarke, R. & Wang, Y., 2006, 19th International Conference on Computer Applications in Industry and Engineering, CAINE 2006. p. 24-31 8 p. (19th International Conference on Computer Applications in Industry and Engineering, CAINE 2006).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2004

    Immuno-targeted gold nanoparticles as in-vivo molecular-specific contrast agents for optical detection of carcinogenesis

    Aaron, J., Collier, T., Mack, V., Richards-Kortum, R., Coghlan, L., Follen, M. & Sokolov, K., 2004, Biomedical Topical Meeting, BIOMED 2004. Optica Publishing Group (formerly OSA), FH18. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Molecular imaging of carcinogenesis with metal nanoparticles

    Sokolov, K., Aaron, J., Kumar, S., Mack, V., Coghlan, L., Gillenwater, A., Storthz, K. A., Follen, M. & Kortum, R. R., 2004, Frontiers in Optics, FiO-2004. Optica Publishing Group (formerly OSA), FThK2. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 1998

    In-vivo Fluorescence EEM Collection of Normal and Cancerous Epithelial Tissue in the Hamster Cheek Pouch Model

    Zuluaga, A. F., Utzinger, U., Brookner, C., Weiss, D., Gimenez-Conti, I., Mitchell, M. F., Coghlan, L. & Richards-Kortum, R., 1998, Biomedical Optical Spectroscopy and Diagnostics, BOSD 1998. Optica Publishing Group (formerly OSA), p. 89-91 3 p. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution