Emre Arslan

Research output

Research output per year 2017 2017 2021 2023 2023

• 5 Article
• 3 Conference contribution
• 1 Paper
• 1 Review article

Research output per year

Research output per year

Search results

• 2017

  A Bayesian approach to Top-Scoring Pairs classification

  Arslan, E. & Braga-Neto, U. M., Jun 16 2017, 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 871-875 5 p. 7952280. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Classifiers 100%
  • Gene expression 38%
  • Genes 33%
  • Machine learning 25%
  • Sampling 24%
  3 Scopus citations

• A new in-situ generated acid system for carbonate dissolution in sandstone and carbonate reservoirs

  Sokhanvarian, K., Pummarapanthu, T., Arslan, E., Nasr-El-Din, H. A., Shimek, N. & Smith, K., 2017, Society of Petroleum Engineers - SPE International Conference on Oilfield Chemistry 2017. Society of Petroleum Engineers (SPE), p. 614-633 20 p. (Proceedings - SPE International Symposium on Oilfield Chemistry; vol. 2017-April).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Sandstone 100%
  • Carbonates 96%
  • Dissolution 90%
  • Acids 77%
  • Carbonate 67%
  13 Scopus citations

• Bayesian top scoring pairs for feature selection

  Arslan, E. & Braga-Neto, U. M., Jul 2 2017, Conference Record of 51st Asilomar Conference on Signals, Systems and Computers, ACSSC 2017. Matthews, M. B. (ed.). Institute of Electrical and Electronics Engineers Inc., p. 387-391 5 p. 8335365. (Conference Record of 51st Asilomar Conference on Signals, Systems and Computers, ACSSC 2017; vol. 2017-October).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Feature Selection 100%
  • scoring 98%
  • Scoring 89%
  • Feature extraction 57%
  • gene expression 33%
  1 Scopus citations

• Reaction rate of a novel in-situ generated HCl acid and calcite

  Arslan, E., Sokhanvarian, K., Nasr-El-din, H. A., Shimek, N. & Smith, K., 2017.

  Research output: Contribution to conference › Paper › peer-review

  • Calcite 100%
  • Reaction rates 78%
  • Acids 62%
  • Dissolution 43%
  • Rotating disks 35%
  8 Scopus citations
• 2021

  Identification of EMT signaling cross-talk and gene regulatory networks by single-cell RNA sequencing

  Deshmukh, A. P., Vasaikar, S. V., Tomczak, K., Tripathi, S., Den Hollander, P., Arslan, E., Chakraborty, P., Soundararajan, R., Jolly, M. K., Rai, K., Levine, H. & Mani, S. A., May 11 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 19, e2102050118.

  Research output: Contribution to journal › Article › peer-review

  • RNA Sequence Analysis 100%
  • Gene Regulatory Networks 96%
  • Epithelial-Mesenchymal Transition 92%
  • Catenins 10%
  • Receptor Protein-Tyrosine Kinases 8%
  109 Scopus citations

• Machine Learning in Epigenomics: Insights into Cancer Biology and Medicine

  Arslan, E., Schulz, J. & Rai, K., Dec 2021, In: Biochimica et Biophysica Acta - Reviews on Cancer. 1876, 2, 188588.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Machine Learning 100%
  • Epigenomics 77%
  • Medicine 64%
  • Epigenome 55%
  • Genetic Epigenesis 31%
  12 Scopus citations

• Reprogramming of H3K9bhb at regulatory elements is a key feature of fasting in the small intestine

  Terranova, C. J., Stemler, K. M., Barrodia, P., Jeter-Jones, S. L., Ge, Z., de la Cruz Bonilla, M., Raman, A., Cheng, C. W., Allton, K. L., Arslan, E., Yilmaz, Ö. H., Barton, M. C., Rai, K. & Piwnica-Worms, H., Nov 23 2021, In: Cell Reports. 37, 8, 110044.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Small Intestine 100%
  • Chromatin 96%
  • Metabolic 88%
  • Fasting 87%
  • Histone 78%
  20 Scopus citations
• 2022

  Chromatin state dynamics confers specific therapeutic strategies in enhancer subtypes of colorectal cancer

  Orouji, E., Raman, A. T., Singh, A. K., Sorokin, A., Arslan, E., Ghosh, A. K., Schulz, J., Terranova, C., Jiang, S., Tang, M., Maitituoheti, M., Callahan, S. C., Barrodia, P., Tomczak, K., Jiang, Y., Jiang, Z., Davis, J. S., Ghosh, S., Lee, H. M., Reyes-Uribe, L., & 9 othersChang, K., Liu, Y., Chen, H., Azhdarinia, A., Morris, J., Vilar, E., Carmon, K. S., Kopetz, S. E. & Rai, K., May 1 2022, In: Gut. 71, 5, p. 938-949 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Epigenome 100%
  • Chromatin 94%
  • Colorectal Neoplasms 85%
  • Epigenomics 70%
  • Histone Code 61%
  20 Scopus citations
• 2023

  Dysregulation and epigenetic reprogramming of NRF2 signaling axis promote acquisition of cisplatin resistance and metastasis in Head and Neck Squamous Cell Carcinoma

  Osman, A. A., Arslan, E., Bartels, M., Michikawa, C., Lindemann, A., Tomczak, K., Yu, W., Sandulache, V., Ma, W., Shen, L., Wang, J., Singh, A. K., Frederick, M. J., Spencer, N. D., Kovacs, J., Heffernan, T., Symmans, W. F., Rai, K. & Myers, J. N., Jan 23 2023, (E-pub ahead of print) In: Clinical cancer research : an official journal of the American Association for Cancer Research.

  Research output: Contribution to journal › Article › peer-review

  • Squamous Cell Carcinoma of Head and Neck 100%
  • Cisplatin 80%
  • Epigenomics 78%
  • Neoplasm Metastasis 55%
  • Clonal Evolution 20%

• Dysregulation and Epigenetic Reprogramming of NRF2 Signaling Axis Promote Acquisition of Cisplatin Resistance and Metastasis in Head and Neck Squamous Cell Carcinoma

  Osman, A. A., Arslan, E., Bartels, M., Michikawa, C., Lindemann, A., Tomczak, K., Yu, W., Sandulache, V., Ma, W., Shen, L., Wang, J., Singh, A. K., Frederick, M. J., Spencer, N. D., Kovacs, J., Heffernan, T., Symmans, W. F., Rai, K. & Myers, J. N., Apr 1 2023, In: Clinical Cancer Research. 29, 7, p. 1344-1359 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Squamous Cell Carcinoma of Head and Neck 100%
  • Cisplatin 80%
  • Epigenomics 78%
  • Neoplasm Metastasis 55%
  • Glutaminase 21%
  6 Scopus citations