Ken Chen

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Ken Chen

Professor

 https://orcid.org/0000-0003-4013-5279

    • 6767 Bertner Ave, Mitchell Basic Science Research Building

      77030 Houston

      United States

    Calculated based on number of publications stored in Pure and citations from Scopus
    20022024

    Research activity per year

    Search results

    • Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig (Nature Communications, (2020), 11, 1, (731), 10.1038/s41467-020-14352-7)

      PCAWG Evolution and Heterogeneity Working Group & PCAWG Consortium, Dec 1 2022, In: Nature communications. 13, 1, 7567.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access

    • Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition (Nature Genetics, (2020), 52, 3, (306-319), 10.1038/s41588-019-0562-0)

      PCAWG-Structural Variation Working Group & PCAWG Consortium, Jun 2023, In: Nature Genetics. 55, 6, p. 1080 1 p.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access
      1 Scopus citations

    • Author Correction: The repertoire of mutational signatures in human cancer (Nature, (2020), 578, 7793, (94-101), 10.1038/s41586-020-1943-3)

      PCAWG Mutational Signatures Working Group & PCAWG Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E41

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access
      3 Scopus citations

    • Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes (Nature Communications, (2020), 11, 1, (729), 10.1038/s41467-020-14367-0)

      PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium, Dec 1 2022, In: Nature communications. 13, 1, 7566.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access

    • Author Correction: Divergent mutational processes distinguish hypoxic and normoxic tumours (Nature Communications, (2020), 11, 1, (737), 10.1038/s41467-019-14052-x)

      PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7569.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access
      1 Scopus citations

    • Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)

      PCAWG Consortium, Jun 2023, In: Nature Genetics. 55, 6, p. 1078 1 p.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access

    • Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes (Nature Biotechnology, (2020), 38, 3, (288-292), 10.1038/s41587-019-0360-3)

      PCAWG Consortium & PCAWG Technical Working Group, Apr 2023, In: Nature biotechnology. 41, 4, p. 577 1 p.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access

    • Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns (Nature Communications, (2020), 11, 1, (728), 10.1038/s41467-019-13825-8)

      PCAWG Tumor Subtypes and Clinical Translation Working Group & PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7573.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access

    • Author Correction: Patterns of somatic structural variation in human cancer genomes (Nature, (2020), 578, 7793, (112-121), 10.1038/s41586-019-1913-9)

      PCAWG-Structural Variation Working Group & PCAWG Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E38

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access
      2 Scopus citations

    • Author Correction: A robust benchmark for detection of germline large deletions and insertions (Nature Biotechnology, (2020), 38, 11, (1347-1355), 10.1038/s41587-020-0538-8)

      Zook, J. M., Hansen, N. F., Olson, N. D., Chapman, L., Mullikin, J. C., Xiao, C., Sherry, S., Koren, S., Phillippy, A. M., Boutros, P. C., Sahraeian, S. M. E., Huang, V., Rouette, A., Alexander, N., Mason, C. E., Hajirasouliha, I., Ricketts, C., Lee, J., Tearle, R., Fiddes, I. T., & 30 othersBarrio, A. M., Wala, J., Carroll, A., Ghaffari, N., Rodriguez, O. L., Bashir, A., Jackman, S., Farrell, J. J., Wenger, A. M., Alkan, C., Soylev, A., Schatz, M. C., Garg, S., Church, G., Marschall, T., Chen, K., Fan, X., English, A. C., Rosenfeld, J. A., Zhou, W., Mills, R. E., Sage, J. M., Davis, J. R., Kaiser, M. D., Oliver, J. S., Catalano, A. P., Chaisson, M. J. P., Spies, N., Sedlazeck, F. J. & Salit, M., Nov 1 2020, In: Nature biotechnology. 38, 11, p. 1357 1 p.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access

    • Author Correction: Genomic basis for RNA alterations in cancer (Nature, (2020), 578, 7793, (129-136), 10.1038/s41586-020-1970-0)

      PCAWG Transcriptome Core Group, PCAWG Transcriptome Working Group & PCAWG Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E37

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access

    • Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)

      PCAWG Consortium, May 2023, In: Nature Genetics. 55, 5, p. 892 1 p.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access
      1 Scopus citations

    • Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (Nature, (2020), 578, 7793, (102-111), 10.1038/s41586-020-1965-x)

      PCAWG Consortium, PCAWG Drivers and Functional Interpretation Working Group & PCAWG-Structural Variation Working Group, Feb 16 2023, In: Nature. 614, 7948, p. E40

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access
      1 Scopus citations

    • Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (Nature Communications, (2020), 11, 1, (4748), 10.1038/s41467-020-18151-y)

      MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 6232.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access

    • A survey of intragenic breakpoints in glioblastoma identifies a distinct subset associated with poor survival

      Zheng, S., Fu, J., Vegesna, R., Mao, Y., Heathcock, L. E., Torres-Garcia, W., Ezhilarasan, R., Wang, S., McKenna, A., Chin, L., Brennan, C. W., Alfred Yung, W. K., Weinstein, J. N., Aldape, K. D., Sulman, E. P., Chen, K., Koul, D. & Verhaak, R. G. W., Jul 1 2013, In: Genes and Development. 27, 13, p. 1462-1472 11 p.

      Research output: Contribution to journal › Article › peer-review

      62 Scopus citations

    • A spatially resolved single-cell genomic atlas of the adult human breast

      Kumar, T., Nee, K., Wei, R., He, S., Nguyen, Q. H., Bai, S., Blake, K., Pein, M., Gong, Y., Sei, E., Hu, M., Casasent, A. K., Thennavan, A., Li, J., Tran, T., Chen, K., Nilges, B., Kashikar, N., Braubach, O., Ben Cheikh, B., & 20 othersNikulina, N., Chen, H., Teshome, M., Menegaz, B., Javaid, H., Nagi, C., Montalvan, J., Lev, T., Mallya, S., Tifrea, D. F., Edwards, R., Lin, E., Parajuli, R., Hanson, S., Winocour, S., Thompson, A., Lim, B., Lawson, D. A., Kessenbrock, K. & Navin, N., Aug 3 2023, In: Nature. 620, 7972, p. 181-191 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      18 Scopus citations

    • A robust benchmark for detection of germline large deletions and insertions

      Zook, J. M., Hansen, N. F., Olson, N. D., Chapman, L., Mullikin, J. C., Xiao, C., Sherry, S., Koren, S., Phillippy, A. M., Boutros, P. C., Sahraeian, S. M. E., Huang, V., Rouette, A., Alexander, N., Mason, C. E., Hajirasouliha, I., Ricketts, C., Lee, J., Tearle, R., Fiddes, I. T., & 30 othersBarrio, A. M., Wala, J., Carroll, A., Ghaffari, N., Rodriguez, O. L., Bashir, A., Jackman, S., Farrell, J. J., Wenger, A. M., Alkan, C., Soylev, A., Schatz, M. C., Garg, S., Church, G., Marschall, T., Chen, K., Fan, X., English, A. C., Rosenfeld, J. A., Zhou, W., Mills, R. E., Sage, J. M., Davis, J. R., Kaiser, M. D., Oliver, J. S., Catalano, A. P., Chaisson, M. J. P., Spies, N., Sedlazeck, F. J. & Salit, M., Nov 1 2020, In: Nature biotechnology. 38, 11, p. 1347-1355 9 p.

      Research output: Contribution to journal › Article › peer-review

      160 Scopus citations

    • A population of heterogeneous breast cancer patient-derived xenografts demonstrate broad activity of PARP inhibitor in BRCA1/2 wild-type tumors

      Evans, K. W., Yuca, E., Akcakanat, A., Scott, S. M., Arango, N. P., Zheng, X., Chen, K., Tapia, C., Tarco, E., Eterovic, A. K., Black, D. M., Litton, J. K., Yap, T. A., Tripathy, D., Mills, G. B. & Meric-Bernstam, F., Nov 1 2017, In: Clinical Cancer Research. 23, 21, p. 6468-6477 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      45 Scopus citations

    • A phase two study of high dose blinatumomab in Richter’s syndrome

      Thompson, P. A., Jiang, X., Banerjee, P., Basar, R., Garg, N., Chen, K., Kaplan, M., Nandivada, V., Cortes, A. K. N., Ferrajoli, A., Keating, M. J., Peterson, C. B., Andreeff, M., Rezvani, K. & Wierda, W. G., Sep 2022, In: Leukemia. 36, 9, p. 2228-2232 5 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      12 Scopus citations

    • A novel immature natural killer cell subpopulation predicts relapse after cord blood transplantation

      Li, L., Chen, H., Marin, D., Xi, Y., Miao, Q., Lv, J., Banerjee, P. P., Shaim, H., Daher, M., Basar, R., Imahashi, N., Jimenez, J., Hu, B., Mehta, R. S., Kerbauy, L. N., Kaplan, M., Mendt, M., Ozcan, G., Gokdemir, E., Sanabria, M. H., & 8 othersLi, Y., Chen, K., Wang, J., Muniz-Feliciano, L., Zhao, W. L., Champlin, R. E., Shpall, E. J. & Rezvani, K., Dec 10 2019, In: Blood Advances. 3, 23, p. 4117-4130 14 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      21 Scopus citations

    • An Organismal CNV Mutator Phenotype Restricted to Early Human Development

      Liu, P., Yuan, B., Carvalho, C. M. B., Wuster, A., Walter, K., Zhang, L., Gambin, T., Chong, Z., Campbell, I. M., Coban Akdemir, Z., Gelowani, V., Writzl, K., Bacino, C. A., Lindsay, S. J., Withers, M., Gonzaga-Jauregui, C., Wiszniewska, J., Scull, J., Stankiewicz, P., Jhangiani, S. N., & 12 othersMuzny, D. M., Zhang, F., Chen, K., Gibbs, R. A., Rautenstrauss, B., Cheung, S. W., Smith, J., Breman, A., Shaw, C. A., Patel, A., Hurles, M. E. & Lupski, J. R., Feb 23 2017, In: Cell. 168, 5, p. 830-842.e7

      Research output: Contribution to journal › Article › peer-review

      Open Access
      54 Scopus citations

    • An integrated map of structural variation in 2,504 human genomes

      Sudmant, P. H., Rausch, T., Gardner, E. J., Handsaker, R. E., Abyzov, A., Huddleston, J., Zhang, Y., Ye, K., Jun, G., Fritz, M. H. Y., Konkel, M. K., Malhotra, A., Stütz, A. M., Shi, X., Casale, F. P., Chen, J., Hormozdiari, F., Dayama, G., Chen, K., Malig, M., & 62 othersChaisson, M. J. P., Walter, K., Meiers, S., Kashin, S., Garrison, E., Auton, A., Lam, H. Y. K., Mu, X. J., Alkan, C., Antaki, D., Bae, T., Cerveira, E., Chines, P., Chong, Z., Clarke, L., Dal, E., Ding, L., Emery, S., Fan, X., Gujral, M., Kahveci, F., Kidd, J. M., Kong, Y., Lameijer, E. W., McCarthy, S., Flicek, P., Gibbs, R. A., Marth, G., Mason, C. E., Menelaou, A., Muzny, D. M., Nelson, B. J., Noor, A., Parrish, N. F., Pendleton, M., Quitadamo, A., Raeder, B., Schadt, E. E., Romanovitch, M., Schlattl, A., Sebra, R., Shabalin, A. A., Untergasser, A., Walker, J. A., Wang, M., Yu, F., Zhang, C., Zhang, J., Zheng-Bradley, X., Zhou, W., Zichner, T., Sebat, J., Batzer, M. A., McCarroll, S. A., Mills, R. E., Gerstein, M. B., Bashir, A., Stegle, O., Devine, S. E., Lee, C., Eichler, E. E. & Korbel, J. O., Sep 30 2015, In: Nature. 526, 7571, p. 75-81 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1455 Scopus citations

    • An integrated map of genetic variation from 1,092 human genomes

      Altshuler, D. M., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H., Mardis, E. R., Marth, G. T., & 371 othersMcVean, G. A., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Dinh, H., Kovar, C., Lee, S., Lewis, L., Muzny, D., Reid, J., Wang, M., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Li, G., Li, J., Li, Y., Li, Z., Liu, X., Lu, Y., Ma, X., Su, Z., Tai, S., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Yin, Y., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Zhou, Y., Gupta, N., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Fulton, L., Fulton, R., Weinstock, G. M., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Auton, A., Yu, F., Bainbridge, M., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Sabo, A., Wang, Y., Yu, J., Coin, L. J. M., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Qin, N., Shao, H., Wang, B., Xie, Y., Ye, C., Yu, C., Zhang, F., Zheng, H., Zhu, H., Garrison, E. P., Kural, D., Lee, W. P., Fung Leong, W., Ward, A. N., Wu, J., Zhang, M., Griffin, L., Hsieh, C. H., Mills, R. E., Shi, X., Von Grotthuss, M., Zhang, C., Daly, M. J., Depristo, M. A., Banks, E., Bhatia, G., Carneiro, M. O., Del Angel, G., Genovese, G., Handsaker, R. E., Hartl, C., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Schaffner, S. F., Shakir, K., Yoon, S. C., Lihm, J., Makarov, V., Jin, H., Kim, W., Cheol Kim, K., Rausch, T., Beal, K., Cunningham, F., Herrero, J., McLaren, W. M., Ritchie, G. R. S., Gottipati, S., Keinan, A., Rodriguez-Flores, J. L., Sabeti, P. C., Grossman, S. R., Tabrizi, S., Tariyal, R., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Bauer, M., Keira Cheetham, R., Cox, T., Eberle, M., Kahn, S., Murray, L., Peden, J., Shaw, R., Ye, K., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Herwig, R., Shriver, M. D., Bustamante, C. D., Byrnes, J. K., De La Vega, F. M., Gravel, S., Kenny, E. E., Kidd, J. M., Maples, B. K., Moreno-Estrada, A., Zakharia, F., Halperin, E., Baran, Y., Craig, D. W., Christoforides, A., Homer, N., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Squire, K., Xiao, C., Sebat, J., Bafna, V., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., James Kent, W., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Lappalainen, T., Devine, S. E., Liu, X., Maroo, A., Tallon, L. J., Rosenfeld, J. A., Michelson, L. P., Min Kang, H., Anderson, P., Angius, A., Bigham, A., Blackwell, T., Busonero, F., Cucca, F., Fuchsberger, C., Jones, C., Jun, G., Li, Y., Lyons, R., Maschio, A., Porcu, E., Reinier, F., Sanna, S., Schlessinger, D., Sidore, C., Tan, A., Kate Trost, M., Awadalla, P., Hodgkinson, A., Lunter, G., Marchini, J. L., Myers, S., Churchhouse, C., Delaneau, O., Gupta-Hinch, A., Iqbal, Z., Mathieson, I., Rimmer, A., Xifara, D. K., Oleksyk, T. K., Fu, Y., Liu, X., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Alkan, C., Hajirasouliha, I., Hormozdiari, F., Ko, A., Sudmant, P. H., Chen, K., Chinwalla, A., Ding, L., Dooling, D., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Tyler-Smith, C., Albers, C. A., Ayub, Q., Chen, Y., Coffey, A. J., Colonna, V., Huang, N., Jostins, L., Li, H., Scally, A., Walter, K., Xue, Y., Zhang, Y., Gerstein, M. B., Abyzov, A., Balasubramanian, S., Chen, J., Clarke, D., Fu, Y., Habegger, L., Harmanci, A. O., Jin, M., Khurana, E., Jasmine Mu, X., Sisu, C., Degenhardt, J., Stütz, A. M., Keira Cheetham, R., Church, D., Michaelson, J. J., Blackburne, B., Lindsay, S. J., Ning, Z., Frankish, A., Harrow, J., Mu, X. J., Fowler, G., Hale, W., Kalra, D., Barker, J., Kelman, G., Kulesha, E., Radhakrishnan, R., Roa, A., Smirnov, D., Streeter, I., Toneva, I., Vaughan, B., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., O'Sullivan, C., Ostapchuk, Y., Phan, L., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Barnes, K. C., Beiswanger, C., Cai, H., Cao, H., Gharani, N., Henn, B., Jones, D., Kaye, J. S., Kent, A., Kerasidou, A., Mathias, R., Ossorio, P. N., Parker, M., Reich, D., Rotimi, C. N., Royal, C. D., Sandoval, K., Su, Y., Tian, Z., Tishkoff, S., Toji, L. H., Via, M., Wang, Y., Yang, H., Yang, L., Zhu, J., Bodmer, W., Bedoya, G., Ming, C. Z., Yang, G., Jia You, C., Peltonen, L., Garcia-Montero, A., Orfao, A., Dutil, J., Martinez-Cruzado, J. C., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Clemm, N. C., Duncanson, A., Dunn, M., Guyer, M. S., Peterson, J. L. & Lacroute, P., Nov 1 2012, In: Nature. 491, 7422, p. 56-65 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      5956 Scopus citations

    • An expanded universe of cancer targets

      the Cancer Target Discovery and Development Network, Mar 4 2021, In: Cell. 184, 5, p. 1142-1155 14 p.

      Research output: Contribution to journal › Review article › peer-review

      Open Access
      107 Scopus citations

    • An evaluation of using mutual information for selection of acoustic-features representation of phonemes for speech recognition

      Omar, M. K., Chen, K., Hasegawa-Johnson, M. & Brandman, Y., 2002, p. 2129-2132. 4 p.

      Research output: Contribution to conference › Paper › peer-review

      8 Scopus citations

    • An automatic prosody labeling system using ANN-based syntactic-prosodic model and GMM-based acoustic-prosodic model

      Chen, K., Hasegawa-Johnson, M. & Cohen, A., 2004, In: ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings. 1, p. I509-I512

      Research output: Contribution to journal › Conference article › peer-review

      85 Scopus citations

    • Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms

      Abyzov, A., Li, S., Kim, D. R., Mohiyuddin, M., Stütz, A. M., Parrish, N. F., Mu, X. J., Clark, W., Chen, K., Hurles, M., Korbel, J. O., Lam, H. Y. K., Lee, C. & Gerstein, M. B., Jun 1 2015, In: Nature communications. 6, 7256.

      Research output: Contribution to journal › Article › peer-review

      62 Scopus citations

    • Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

      PCAWG Drivers and Functional Interpretation Working Group, PCAWG-Structural Variation Working Group & PCAWG Consortium, Feb 6 2020, In: Nature. 578, 7793, p. 102-111 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      336 Scopus citations

    • A map of human genome variation from population-scale sequencing

      Altshuler, D. L., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Collins, F. S., De La Vega, F. M., Donnelly, P., Egholm, M., Flicek, P., Gabriel, S. B., Gibbs, R. A., Knoppers, B. M., Lander, E. S., Lehrach, H., Mardis, E. R., McVean, G. A., Nickerson, D. A., Peltonen, L., & 348 othersSchafer, A. J., Sherry, S. T., Wang, J., Wilson, R. K., Deiros, D., Metzker, M., Muzny, D., Reid, J., Wheeler, D., Wang, S. J., Li, J., Jian, M., Li, G., Li, R., Liang, H., Tian, G., Wang, B., Wang, J., Wang, W., Yang, H., Zhang, X., Zheng, H., Ambrogio, L., Bloom, T., Cibulskis, K., Fennell, T. J., Jaffe, D. B., Shefler, E., Sougnez, C. L., Bentley, I. D. R., Gormley, N., Humphray, S., Kingsbury, Z., Koko-Gonzales, P., Stone, J., Mc Kernan, K. J., Costa, G. L., Ichikawa, J. K., Lee, C. C., Sudbrak, R., Borodina, T. A., Dahl, A., Davydov, A. N., Marquardt, P., Mertes, F., Nietfeld, W., Rosenstiel, P., Schreiber, S., Soldatov, A. V., Timmermann, B., Tolzmann, M., Affourtit, J., Ashworth, D., Attiya, S., Bachorski, M., Buglione, E., Burke, A., Caprio, A., Celone, C., Clark, S., Conners, D., Desany, B., Gu, L., Guccione, L., Kao, K., Kebbel, A., Knowlton, J., Labrecque, M., McDade, L., Mealmaker, C., Minderman, M., Nawrocki, A., Niazi, F., Pareja, K., Ramenani, R., Riches, D., Song, W., Turcotte, C., Wang, S., Dooling, D., Fulton, L., Fulton, R., Weinstock, G., Burton, J., Carter, D. M., Churcher, C., Coffey, A., Cox, A., Palotie, A., Quail, M., Skelly, T., Stalker, J., Swerdlow, H. P., Turner, D., De Witte, A., Giles, S., Bainbridge, M., Challis, D., Sabo, A., Yu, F., Yu, J., Fang, X., Guo, X., Li, Y., Luo, R., Tai, S., Wu, H., Zheng, H., Zheng, X., Zhou, Y., Marth, G. T., Garrison, E. P., Huang, W., Indap, A., Kural, D., Lee, W. P., Leong, W. F., Quinlan, A. R., Stewart, C., Stromberg, M. P., Ward, A. N., Wu, J., Lee, C., Mills, R. E., Shi, X., Daly, M. J., DePristo, M. A., Ball, A. D., Banks, E., Browning, B. 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      6193 Scopus citations

    • A global reference for human genetic variation

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      Open Access
      10293 Scopus citations

    • A feasibility study of returning clinically actionable somatic genomic alterations identified in a research laboratory

      Arango, N. P., Brusco, L., Shaw, K. R. M., Chen, K., Eterovic, A. K., Holla, V., Johnson, A., Litzenburger, B., Khotskaya, Y. B., Sanchez, N., Bailey, A., Zheng, X., Horombe, C., Kopetz, S., Farhangfar, C. J., Routbort, M., Broaddus, R., Bernstam, E. V., Mendelsohn, J., Mills, G. B., & 1 othersMeric-Bernstam, F., 2017, In: Oncotarget. 8, 26, p. 41806-41814 9 p.

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      Open Access
      12 Scopus citations

    • A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

      PCAWG Tumor Subtypes and Clinical Translation Working Group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 728.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      113 Scopus citations

    • A Decision Support Framework for Genomically Informed Investigational Cancer Therapy

      Meric-Bernstam, F., Johnson, A., Holla, V., Bailey, A. M., Brusco, L., Chen, K., Routbort, M., Patel, K. P., Zeng, J., Kopetz, S., Davies, M. A., Piha-Paul, S. A., Hong, D. S., Eterovic, A. K., Tsimberidou, A. M., Broaddus, R., Bernstam, E. V., Shaw, K. R., Mendelsohn, J. & Mills, G. B., Jul 1 2015, In: Journal of the National Cancer Institute. 107, 7

      Research output: Contribution to journal › Review article › peer-review

      Open Access
      162 Scopus citations

    • Adaptive responses in a PARP inhibitor window of opportunity trial illustrate limited functional interlesional heterogeneity and potential combination therapy options

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      Open Access
      14 Scopus citations

    • Active disclosure of secondary germline findings to deceased research participants' personal representatives: Process and outcomes

      Daniels, M., Wathoo, C., Brusco, L., Lu, K. H., Shaw, K., Dumbrava, E. E. I., Arun, B., Strong, L., Litton, J. K., Eterovic, K., Aytac, U., Mendelsohn, J., Mills, G. B., Chen, K. & Meric-Bernstam, F., 2017, In: JCO Precision Oncology. 2017, 1, p. 1-5 5 p.

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      Open Access
      4 Scopus citations

    • Activated B cells suppress T-cell function through metabolic competition

      Imahashi, N., Basar, R., Huang, Y., Wang, F., Baran, N., Banerjee, P. P., Lu, J., Nunez Cortes, A. K., Uprety, N., Ensley, E., Muniz-Feliciano, L., Laskowski, T. J., Moyes, J. S., Daher, M., Mendt Vilchez, M. C., Kerbauy, L. N., Shanley, M., Li, L., Lim, F. L. W. I., Shaim, H., & 7 othersLi, Y., Konopleva, M., Green, M., Wargo, J., Shpall, E. J., Chen, K. & Rezvani, K., Dec 21 2022, In: Journal for immunotherapy of cancer. 10, 12, e005644.

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      Open Access
      4 Scopus citations

    • Actionability classification of variants of unknown significance correlates with functional effect

      Johnson, A., Ng, P. K. S., Kahle, M., Castillo, J., Amador, B., Wang, Y., Zeng, J., Holla, V., Vu, T., Su, F., Kim, S. H., Conway, T., Jiang, X., Chen, K., Shaw, K. R. M., Yap, T. A., Rodon, J., Mills, G. B. & Meric-Bernstam, F., Dec 2023, In: npj Precision Oncology. 7, 1, 67.

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      Open Access

    • Ab initio spillover compensation in mass cytometry data

      Miao, Q., Wang, F., Dou, J., Iqbal, R., Muftuoglu, M., Basar, R., Li, L., Rezvani, K. & Chen, K., Sep 2021, In: Cytometry Part A. 99, 9, p. 899-909 11 p.

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      Open Access
      7 Scopus citations

    • Ability to generate patient-derived Breast cancer xenografts is enhanced in chemoresistant disease and predicts poor patient outcomes

      McAuliffe, P. F., Evans, K. W., Akcakanat, A., Chen, K., Zheng, X., Zhao, H., Eterovic, A. K., Sangai, T., Holder, A. M., Sharma, C., Chen, H., Do, K. A., Tarco, E., Gagea, M., Naff, K. A., Sahin, A., Multani, A. S., Black, D. M., Mittendorf, E. A., Bedrosian, I., & 3 othersMills, G. B., Gonzalez-Angulo, A. M. & Meric-Bernstam, F., Sep 1 2015, In: PloS one. 10, 9, e0136851.

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      Open Access
      46 Scopus citations