@inproceedings{cc6cb603308b43ebad353c99e8a50ce1,
title = "Construction of genomic regulatory encyclopedias: Strategies and case studies",
abstract = "Encyclopedias of regulatory genomic elements provide a foundation for research in areas such as disease diagnosis, disease treatment, and crop enhancement. The construction of complete encyclopedias of organism-specific genomic elements involved in gene regulation remains a significant challenge. To address this problem, the authors present novel bioinformatics strategies for exploring the word landscapes of putative regulatory regions of genomes. The methods are incorporated into the WordSeeker software tool, which is available at http://word-seeker.org. The effectiveness of these strategies is demonstrated through several case studies.",
keywords = "Cis-regulatory element discovery, Gene regulation, Motif discovery, Regulatory elements, Regulatory genomics, Transcription factor binding site discovery",
author = "Jens Lichtenberg and Mohit Alam and Thomas Bitterman and Frank Drews and Klaus Ecker and Laura Elnitski and Susan Evans and Matt Geisler and Erich Grotewold and Dazhang Gu and Edwin Jacox and Kyle Kurz and Lee, {Stephen S.} and Xiaoyu Liang and Majmudar, {Pooja M.} and Paul Morris and Chase Nelson and Eric Stockinger and Welch, {Joshua D.} and Sarah Wyatt and Alper Yilmaz and Welch, {Lonnie R.}",
year = "2009",
doi = "10.1109/OCCBIO.2009.9",
language = "English (US)",
isbn = "9780769536859",
series = "OCCBIO'09: 2009 Ohio Collaborative Conference on Bioinformatics",
pages = "65--70",
booktitle = "OCCBIO'09",
note = "2009 Ohio Collaborative Conference on Bioinformatics, OCCBIO 2009 ; Conference date: 15-06-2009 Through 17-06-2009",
}