survivalContour: visualizing predicted survival via colored contour plots

Yushu Shi, Liangliang Zhang, Kim Anh Do, Robert R. Jenq, Christine B. Peterson

Research output: Contribution to journalArticlepeer-review

Abstract

Advances in survival analysis have facilitated unprecedented flexibility in data modeling, yet there remains a lack of tools for illustrating the influence of continuous covariates on predicted survival outcomes. We propose the utilization of a colored contour plot to depict the predicted survival probabilities over time. Our approach is capable of supporting conventional models, including the Cox and Fine-Gray models. However, its capability shines when coupled with cutting-edge machine learning models such as random survival forests and deep neural networks.

Original languageEnglish (US)
Article numbervbae105
JournalBioinformatics Advances
Volume4
Issue number1
DOIs
StatePublished - 2024
Externally publishedYes

ASJC Scopus subject areas

  • Structural Biology
  • Molecular Biology
  • Genetics
  • Computer Science Applications

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