Yiling Lu

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Yiling Lu

Professor

 https://orcid.org/0000-0002-3662-2106
    Calculated based on number of publications stored in Pure and citations from Scopus
    1990 …2023

    Research activity per year

    Search results

    • Article

      Evidence that phosphatidylinositol 3-kinase- and mitogen-activated protein kinase kinase-4/c-Jun NH2-terminal kinase-dependent pathways cooperate to maintain lung cancer cell survival

      Lee, H. Y., Srinivas, H., Xia, D., Lu, Y., Superty, R., LaPushin, R., Gomez-Manzano, C., Gal, A. M., Walsh, G. L., Force, T., Ueki, K., Mills, G. B. & Kurie, J. M., Jul 27 2003, In: Journal of Biological Chemistry. 278, 26, p. 23630-23638 9 p.

      Research output: Contribution to journal › Article › peer-review

      55 Scopus citations

    • Exosomal PD-L1 contributes to immunosuppression and is associated with anti-PD-1 response

      Chen, G., Huang, A. C., Zhang, W., Zhang, G., Wu, M., Xu, W., Yu, Z., Yang, J., Wang, B., Sun, H., Xia, H., Man, Q., Zhong, W., Antelo, L. F., Wu, B., Xiong, X., Liu, X., Guan, L., Li, T., Liu, S., & 19 othersYang, R., Lu, Y., Dong, L., McGettigan, S., Somasundaram, R., Radhakrishnan, R., Mills, G., Lu, Y., Kim, J., Chen, Y. H., Dong, H., Zhao, Y., Karakousis, G. C., Mitchell, T. C., Schuchter, L. M., Herlyn, M., Wherry, E. J., Xu, X. & Guo, W., Aug 16 2018, In: Nature. 560, 7718, p. 382-386 5 p.

      Research output: Contribution to journal › Article › peer-review

      1747 Scopus citations

    • Explore, visualize, and analyze functional cancer proteomic data using the cancer proteome atlas

      Li, J., Akbani, R., Zhao, W., Lu, Y., Weinstein, J. N., Mills, G. B. & Liang, H., Nov 1 2017, In: Cancer Research. 77, 21, p. e51-e54

      Research output: Contribution to journal › Article › peer-review

      Open Access
      75 Scopus citations

    • Expression of Autotaxin and Lysophosphatidic Acid Receptors Increases Mammary Tumorigenesis, Invasion, and Metastases

      Liu, S., Umezu-Goto, M., Murph, M., Lu, Y., Liu, W., Zhang, F., Yu, S., Stephens, L. C., Cui, X., Murrow, G., Coombes, K., Muller, W., Hung, M. C., Perou, C. M., Lee, A. V., Fang, X. & Mills, G. B., Jun 2 2009, In: Cancer cell. 15, 6, p. 539-550 12 p.

      Research output: Contribution to journal › Article › peer-review

      326 Scopus citations

    • Frequent mutation of receptor protein tyrosine phosphatases provides a mechanism for STAT3 hyperactivation in head and neck cancer

      Lui, V. W., Peyser, N. D., Ng, P. K. S., Hritz, J., Zeng, Y., Lu, Y., Li, H., Wang, L., Gilbert, B. R., General, I. J., Bahar, I., Ju, Z., Wang, Z., Pendleton, K. P., Xiao, X., Du, Y., Vries, J. K., Hammerman, P. S., Garraway, L. A., Mills, G. B., & 2 othersJohnson, D. E. & Grandis, J. R., Jan 21 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 3, p. 1114-1119 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      77 Scopus citations

    • Frequent mutation of the PI3K pathway in head and neck cancer defines predictive biomarkers

      Lui, V. W. Y., Hedberg, M. L., Li, H., Vangara, B. S., Pendleton, K., Zeng, Y., Lu, Y., Zhang, Q., Du, Y., Gilbert, B. R., Freilino, M., Sauerwein, S., Peyser, N. D., Xiao, D., Diergaarde, B., Wang, L., Chiosea, S., Seethala, R., Johnson, J. T., Kim, S., & 9 othersDuvvuri, U., Ferris, R. L., Romkes, M., Nukui, T., Ng, P. K. S., Garraway, L. A., Hammerman, P. S., Mills, G. B. & Grandis, J. R., Jul 2013, In: Cancer discovery. 3, 7, p. 761-769 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      461 Scopus citations

    • Frequent post-operative monitoring of colorectal cancer using individualised ctDNA validated by multiregional molecular profiling

      Yaegashi, M., Iwaya, T., Sasaki, N., Fujita, M., Ju, Z., Siwak, D., Hachiya, T., Sato, K., Endo, F., Kimura, T., Otsuka, K., Sugimoto, R., Sugai, T., Liotta, L., Lu, Y., Mills, G. B., Nakagawa, H. & Nishizuka, S. S., Apr 27 2021, In: British journal of cancer. 124, 9, p. 1556-1565 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      6 Scopus citations

    • Functional proteomic analysis of advanced serous ovarian cancer using reverse phase protein array: TGF-β pathway signaling indicates response to primary chemotherapy

      Carey, M. S., Agarwal, R., Gilks, B., Swenerton, K., Kalloger, S., Santos, J., Ju, Z., Lu, Y., Zhang, F., Coombes, K. R., Miller, D., Huntsman, D., Mills, G. B. & Hennessy, B. T., May 15 2010, In: Clinical Cancer Research. 16, 10, p. 2852-2860 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      53 Scopus citations

    • Functional proteomics identifies miRNAs to target a p27/Myc/phospho-Rb signature in breast and ovarian cancer

      Seviour, E. G., Sehgal, V., Lu, Y., Luo, Z., Moss, T., Zhang, F., Hill, S. M., Liu, W., Maiti, S. N., Cooper, L., Azencot, R., Lopez-Berestein, G., Rodriguez-Aguayo, C., Roopaimoole, R., Pecot, C., Sood, A. K., Mukherjee, S., Gray, J. W., Mills, G. B. & Ram, P. T., Feb 11 2016, In: Oncogene. 35, 6, p. 691-701 11 p.

      Research output: Contribution to journal › Article › peer-review

      37 Scopus citations

    • Genes affecting the cell cycle, growth, maintenance drug sensitivity are preferentially regulated by anti-HER2 antibody through phosphatidylinositol 3-kinase-AKT signaling

      Le, X. F., Lammayot, A., Gold, D., Lu, Y., Mao, W., Chang, T., Patel, A., Mills, G. B. & Bast, R. C., Jan 21 2005, In: Journal of Biological Chemistry. 280, 3, p. 2092-2104 13 p.

      Research output: Contribution to journal › Article › peer-review

      61 Scopus citations

    • Genome-wide perturbations by miRNAs map onto functional cellular pathways, identifying regulators of chromatin modifiers

      Moss, T. J., Luo, Z., Seviour, E. G., Sehgal, V., Lu, Y., Hill, S. M., Rupaimoole, R., Lee, J. S., Rodriguez-Aguayo, C., Lopez-Berestein, G., Sood, A. K., Azencott, R., Gray, J. W., Mukherjee, S., Mills, G. B. & Ram, P. T., Sep 28 2015, In: npj Systems Biology and Applications. 1, 15001.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3 Scopus citations

    • Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 194-212.e6

      Research output: Contribution to journal › Article › peer-review

      Open Access
      216 Scopus citations

    • Genomic and Functional Approaches to Understanding Cancer Aneuploidy

      The Cancer Genome Atlas Research Network, Apr 9 2018, In: Cancer cell. 33, 4, p. 676-689.e3

      Research output: Contribution to journal › Article › peer-review

      Open Access
      576 Scopus citations

    • Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 239-254.e6

      Research output: Contribution to journal › Article › peer-review

      Open Access
      663 Scopus citations

    • Genomic Classification of Cutaneous Melanoma

      The Cancer Genome Atlas Network, Jun 20 2015, In: Cell. 161, 7, p. 1681-1696 16 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2251 Scopus citations

    • Genomic footprints of activated telomere maintenance mechanisms in cancer

      PCAWG-Structural Variation Working Group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 733.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      70 Scopus citations

    • Glucose starvation induces mutation and lineage-dependent adaptive responses in a large collection of cancer cell lines

      He, N., Kim, N., Jeong, E., Lu, Y., Mills, G. B. & Yoon, S., Jan 2016, In: International journal of oncology. 48, 1, p. 67-72 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      8 Scopus citations

    • Grb2 depletion under non-stimulated conditions inhibits PTEN, promotes Akt-induced tumor formation and contributes to poor prognosis in ovarian cancer

      Timsah, Z., Ahmed, Z., Ivan, C., Berrout, J., Gagea, M., Zhou, Y., Pena, G. N. A., Hu, X., Vallien, C., Kingsley, C. V., Lu, Y., Hancock, J. F., Liu, J., Gladden, A. B., Mills, G. B., Lopez-Berestein, G., Hung, M. C., Sood, A. K., Bogdanov, M. & Ladbury, J. E., Apr 28 2016, In: Oncogene. 35, 17, p. 2186-2196 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      23 Scopus citations

    • High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

      PCAWG Transcriptome Working Group, PCAWG-Structural Variation Working Group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 736.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      46 Scopus citations

    • High frequency of PIK3R1 and PIK3R2 mutations in endometrial cancer elucidates a novel mechanism for regulation of PTEN protein stability

      Cheung, L. W. T., Hennessy, B. T., Li, J., Yu, S., Myers, A. P., Djordjevic, B., Lu, Y., Katherine, S. H., Dyer, M. D., Zhang, F., Ju, Z., Cantley, L. C., Scherer, S. E., Liang, H., Lu, K. H., Broaddus, R. R. & Mills, G. B., Jun 7 2011, In: Cancer discovery. 1, 2, p. 170-185 16 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      377 Scopus citations

    • HSP70 inhibition limits FAK-dependent invasion and enhances the response to melanoma treatment with BRAF inhibitors

      Budina-Kolomets, A., Webster, M. R., Leu, J. I. J., Jennis, M., Krepler, C., Guerrini, A., Kossenkov, A. V., Xu, W., Karakousis, G., Schuchter, L., Amaravadi, R. K., Wu, H., Yin, X., Liu, Q., Lu, Y., Mills, G. B., Xu, X., George, D. L., Weeraratna, A. T. & Murphy, M. E., May 1 2016, In: Cancer Research. 76, 9, p. 2720-2730 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      30 Scopus citations

    • Identification and Partial Characterization of an EctoATPase Expressed by Human Natural Killer Cells

      Dombrowski, K. E., Phillips, C. A., Trevillyan, J. M., Lu, Y., Cone, J. C. & Phillips, C. A., 1993, In: Biochemistry. 32, 26, p. 6515-6522 8 p.

      Research output: Contribution to journal › Article › peer-review

      42 Scopus citations

    • Identification and validation of a prognostic proteomic signature for cervical cancer

      Rader, J. S., Pan, A., Corbin, B., Iden, M., Lu, Y., Vellano, C. P., Akbani, R., Mills, G. B. & Simpson, P., Nov 2019, In: Gynecologic oncology. 155, 2, p. 324-330 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      6 Scopus citations

    • Identification of biomarkers of response to preoperative talazoparib monotherapy in treatment naïve gBRCA+ breast cancers

      Liu, X., Ge, Z., Yang, F., Contreras, A., Lee, S., White, J. B., Lu, Y., Labrie, M., Arun, B. K., Moulder, S. L., Mills, G. B., Piwnica-Worms, H., Litton, J. K. & Chang, J. T., Dec 2022, In: npj Breast Cancer. 8, 1, 64.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3 Scopus citations

    • Identification of optimal drug combinations targeting cellular networks: Integrating phospho-proteomics and computational network analysis

      Iadevaia, S., Lu, Y., Morales, F. C., Mills, G. B. & Ram, P. T., Sep 1 2010, In: Cancer Research. 70, 17, p. 6704-6714 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      175 Scopus citations

    • Impact of cold ischemic time and freeze-thaw cycles on RNA, DNA and protein quality in colorectal cancer tissues biobanking

      Fan, X. J., Huang, Y., Wu, P. H., Yin, X. K., Yu, X. H., Fu, X. H., Feng, L. L., Wang, Y. L., Yi, H. J., Chen, Z. T., Yin, J. X., Zhang, D. L., Feng, W. X., Bai, S. M., Kim, T., Mills, G. B., Lu, Y. L., Wan, X. B. & Wang, L., 2019, In: Journal of Cancer. 10, 20, p. 4978-4988 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3 Scopus citations

    • Implementation of a Multiplex and Quantitative Proteomics Platform for Assessing Protein Lysates Using DNA-Barcoded Antibodies

      Lee, J., Geiss, G. K., Demirkan, G., Vellano, C. P., Filanoski, B., Lu, Y., Ju, Z., Yu, S., Guo, H., Bogatzki, L. Y., Carter, W., Meredith, R. K., Krishnamurthy, S., Ding, Z., Beechem, J. M. & Mills, G. B., Jun 2018, In: Molecular and Cellular Proteomics. 17, 6, p. 1245-1258 14 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      16 Scopus citations

    • Improved prediction of PARP inhibitor response and identification of synergizing agents through use of a novel gene expression signature generation algorithm

      McGrail, D. J., Lin, C. C. J., Garnett, J., Liu, Q., Mo, W., Dai, H., Lu, Y., Yu, Q., Ju, Z., Yin, J., Vellano, C. P., Hennessy, B., Mills, G. B. & Lin, S. Y., Dec 1 2017, In: npj Systems Biology and Applications. 3, 1, 8.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      45 Scopus citations

    • Induction of telomere dysfunction prolongs disease control of therapy-resistant melanoma

      Zhang, G., Wu, L. W., Mender, I., Barzily-Rokni, M., Hammond, M. R., Ope, O., Cheng, C., Vasilopoulos, T., Randell, S., Sadek, N., Beroard, A., Xiao, M., Tian, T., Tan, J., Saeed, U., Sugarman, E., Krepler, C., Brafford, P., Sproesser, K., Murugan, S., & 24 othersSomasundaram, R., Garman, B., Wubbenhorst, B., Woo, J., Yin, X., Liu, Q., Frederick, D. T., Miao, B., Xu, W., Karakousis, G. C., Xu, X., Schuchter, L. M., Mitchell, T. C., Kwong, L. N., Amaravadi, R. K., Lu, Y., Boland, G. M., Wei, Z., Nathanson, K., Herbig, U., Mills, G. B., Flaherty, K. T., Herlyn, M. & Shay, J. W., Oct 1 2018, In: Clinical Cancer Research. 24, 19, p. 4771-4784 14 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      28 Scopus citations

    • Inferring structural variant cancer cell fraction

      PCAWG Evolution and Heterogeneity Working Group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 730.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      27 Scopus citations

    • Inhibiting JNK dephosphorylation and induction of apoptosis by novel anticancer agent NSC-741909 in cancer cells

      Wei, X., Guo, W., Wu, S., Wang, L., Lu, Y., Xu, B., Liu, J. & Fang, B., Jun 19 2009, In: Journal of Biological Chemistry. 284, 25, p. 16948-16955 8 p.

      Research output: Contribution to journal › Article › peer-review

      24 Scopus citations

    • Inhibition of Akt survival pathway by a small-molecule inhibitor in human glioblastoma

      Koul, D., Shen, R., Bergh, S., Sheng, X., Shishodia, S., Lafortune, T. A., Lu, Y., de Groot, J. F., Mills, G. B. & Yung, W. K. A., Mar 2006, In: Molecular cancer therapeutics. 5, 3, p. 637-644 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      81 Scopus citations

    • Inhibition of cds-mediated t cell activation by fsba: evidence for an intracellular site of action

      Bjorndahl, J. M., Trevillvan, J. M., Lu, Y. & Phillips, C. A., 1996, In: FASEB Journal. 10, 6, p. A1447

      Research output: Contribution to journal › Article › peer-review

    • Inhibition of growth-factor-induced phosphorylation and activation of protein kinase B/Akt by atypical protein kinase C in breast cancer cells

      Mao, M., Fang, X., Lu, Y., LaPushin, R., Bast, J. & Mills, G. B., Dec 1 2000, In: Biochemical Journal. 352, 2, p. 475-482 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      68 Scopus citations

    • Inhibition of phosphatidylinositol 3′-kinase increases efficacy of paclitaxel in in vitro and in vivo ovarian cancer models

      Hu, L., Hofmann, J., Lu, Y., Mills, G. B. & Jaffe, R. B., 2002, In: Cancer Research. 62, 4, p. 1087-1092 6 p.

      Research output: Contribution to journal › Article › peer-review

      356 Scopus citations

    • Insulin-like growth factor-I inhibits progesterone receptor expression in breast cancer cells via the phosphatidylinositol 3-kinase/Akt/mammalian target of rapamycin pathway: Progesterone receptor as a potential indicator of growth factor activity in breast cancer

      Cui, X., Zhang, P., Deng, W., Oesterreich, S., Lu., Y., Mills, G. B. & Lee, A. V., Apr 1 2003, In: Molecular Endocrinology. 17, 4, p. 575-588 14 p.

      Research output: Contribution to journal › Article › peer-review

      202 Scopus citations

    • Integrated analysis reveals microRNA networks coordinately expressed with key proteins in breast cancer

      Oslo Breast Cancer Research Consortium (OSBREAC), Feb 2 2015, In: Genome medicine. 7, 1, 21.

      Research output: Contribution to journal › Article › peer-review

      32 Scopus citations

    • Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 213-226.e3

      Research output: Contribution to journal › Article › peer-review

      Open Access
      73 Scopus citations

    • Integrated genomic and molecular characterization of cervical cancer

      The Cancer Genome Atlas Research Network, Mar 16 2017, In: Nature. 543, 7645, p. 378-384 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      985 Scopus citations

    • Integrated genomic characterization of endometrial carcinoma

      Getz, G., Gabriel, S. B., Cibulskis, K., Lander, E., Sivachenko, A., Sougnez, C., Lawrence, M., Kandoth, C., Dooling, D., Fulton, R., Fulton, L., Kalicki-Veizer, J., McLellan, M. D., O'Laughlin, M., Schmidt, H., Wilson, R. K., Ye, K., Li, D., Ally, A., Balasundaram, M., & 256 othersBirol, I., Butterfield, Y. S. N., Carlsen, R., Carter, C., Chu, A., Chuah, E., Chun, H. J. E., Dhalla, N., Guin, R., Hirst, C., Holt, R. A., Jones, S. J. M., Lee, D., Li, H. I., Marra, M. A., Mayo, M., Moore, R. A., Mungall, A. J., Plettner, P., Schein, J. E., Sipahimalani, P., Tam, A., Varhol, R. J., Gordon Robertson, A., Cherniack, A. D., Pashtan, I., Saksena, G., Onofrio, R. C., Schumacher, S. E., Tabak, B., Carter, S. L., Hernandez, B., Gentry, J., Salvesen, H. B., Ardlie, K., Winckler, W., Beroukhim, R., Meyerson, M., Hadjipanayis, A., Lee, S., Mahadeshwar, H. S., Park, P., Protopopov, A., Ren, X., Seth, S., Song, X., Tang, J., Xi, R., Yang, L., Dong, Z., Kucherlapati, R., Chin, L., Zhang, J., Todd Auman, J., Balu, S., Bodenheimer, T., Buda, E., Neil Hayes, D., Hoyle, A. P., Jefferys, S. R., Jones, C. D., Meng, S., Mieczkowski, P. A., Mose, L. E., Parker, J. S., Perou, C. M., Roach, J., Yan, S., Simons, J. V., Soloway, M. G., Tan, D., Topal, M. D., Waring, S., Wu, J., Hoadley, K. A., Baylin, S. B., Bootwalla, M. S., Lai, P. H., Triche, T. J., Van Den Berg, D. J., Weisenberger, D. J., Laird, P. W., Shen, H., Cho, J., Dicara, D., Frazer, S., Heiman, D., Jing, R., Lin, P., Mallard, W., Stojanov, P., Voet, D., Zhang, H., Zou, L., Noble, M., Reynolds, S. M., Shmulevich, I., Arman Aksoy, B., Antipin, Y., Ciriello, G., Dresdner, G., Gao, J., Gross, B., Jacobsen, A., Ladanyi, M., Reva, B., Sander, C., Sinha, R., Onur Sumer, S., Taylor, B. S., Cerami, E., Weinhold, N., Schultz, N., Shen, R., Benz, S., Goldstein, T., Haussler, D., Ng, S., Szeto, C., Stuart, J., Benz, C. C., Yau, C., Zhang, W., Annala, M., Broom, B. M., Casasent, T. D., Ju, Z., Liang, H., Liu, G., Lu, Y., Unruh, A. K., Wakefield, C., Weinstein, J. N., Zhang, N., Liu, Y., Broaddus, R., Akbani, R., Mills, G. B., Adams, C., Barr, T., Black, A. D., Bowen, J., Deardurff, J., Frick, J., Gastier-Foster, J. M., Grossman, T., Harper, H. A., Hart-Kothari, M., Helsel, C., Hobensack, A., Kuck, H., Kneile, K., Leraas, K. M., Lichtenberg, T. M., McAllister, C., Pyatt, R. E., Ramirez, N. C., Tabler, T. R., Vanhoose, N., White, P., Wise, L., Zmuda, E., Barnabas, N., Berry-Green, C., Blanc, V., Boice, L., Button, M., Farkas, A., Green, A., MacKenzie, J., Nicholson, D., Kalloger, S. E., Blake Gilks, C., Karlan, B. Y., Lester, J., Orsulic, S., Borowsky, M., Cadungog, M., Czerwinski, C., Huelsenbeck-Dill, L., Iacocca, M., Petrelli, N., Rabeno, B., Witkin, G., Nemirovich-Danchenko, E., Potapova, O., Rotin, D., Berchuck, A., Birrer, M., Disaia, P., Monovich, L., Curley, E., Gardner, J., Mallery, D., Penny, R., Dowdy, S. C., Winterhoff, B., Dao, L., Gostout, B., Meuter, A., Teoman, A., Dao, F., Olvera, N., Bogomolniy, F., Garg, K., Soslow, R. A., Abramov, M., Bartlett, J. M. S., Kodeeswaran, S., Parfitt, J., Moiseenko, F., Clarke, B. A., Goodman, M. T., Carney, M. E., Matsuno, R. K., Fisher, J., Huang, M., Kimryn Rathmell, W., Thorne, L., Van Le, L., Dhir, R., Edwards, R., Elishaev, E., Zorn, K., Goodfellow, P. J., Mutch, D., Kahn, A. B., Bell, D. W., Pollock, P. M., Wang, C., Wheeler, D., Shinbrot, E., Gordon Robertson, A., Ding, L., Blake Gilks, C., Mardis, E. R., Ayala, B., Chu, A. L., Jensen, M. A., Kothiyal, P., Pihl, T. D., Pontius, J., Pot, D. A., Snyder, E. E., Srinivasan, D., Mills Shaw, K. R., Sheth, M., Davidsen, T., Eley, G., Ferguson, M. L., Yang, L., Guyer, M. S., Ozenberger, B. A., Sofia, H. J., Gordon Robertson, A. & Levine, D. A., 2013, In: Nature. 497, 7447, p. 67-73 7 p.

      Research output: Contribution to journal › Article › peer-review

      3646 Scopus citations

    • Integrated genomic characterization of oesophageal carcinoma

      The Cancer Genome Atlas Research Network, Jan 12 2017, In: Nature. 541, 7636, p. 169-174 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1195 Scopus citations

    • Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma

      Raphael, B. J., Hruban, R. H., Aguirre, A. J., Moffitt, R. A., Yeh, J. J., Stewart, C., Robertson, A. G., Cherniack, A. D., Gupta, M., Getz, G., Gabriel, S. B., Meyerson, M., Cibulskis, C., Fei, S. S., Hinoue, T., Shen, H., Laird, P. W., Ling, S., Lu, Y., Mills, G. B., & 251 othersAkbani, R., Loher, P., Londin, E. R., Rigoutsos, I., Telonis, A. G., Gibb, E. A., Goldenberg, A., Mezlini, A. M., Hoadley, K. A., Collisson, E., Lander, E., Murray, B. A., Hess, J., Rosenberg, M., Bergelson, L., Zhang, H., Cho, J., Tiao, G., Kim, J., Livitz, D., Leshchiner, I., Reardon, B., Van Allen, E., Kamburov, A., Beroukhim, R., Saksena, G., Schumacher, S. E., Noble, M. S., Heiman, D. I., Gehlenborg, N., Kim, J., Lawrence, M. S., Adsay, V., Petersen, G., Klimstra, D., Bardeesy, N., Leiserson, M. D. M., Bowlby, R., Kasaian, K., Birol, I., Mungall, K. L., Sadeghi, S., Weinstein, J. N., Spellman, P. T., Liu, Y., Amundadottir, L. T., Tepper, J., Singhi, A. D., Dhir, R., Paul, D., Smyrk, T., Zhang, L., Kim, P., Bowen, J., Frick, J., Gastier-Foster, J. M., Gerken, M., Lau, K., Leraas, K. M., Lichtenberg, T. M., Ramirez, N. C., Renkel, J., Sherman, M., Wise, L., Yena, P., Zmuda, E., Shih, J., Ally, A., Balasundaram, M., Carlsen, R., Chu, A., Chuah, E., Clarke, A., Dhalla, N., Holt, R. A., Jones, S. J. M., Lee, D., Ma, Y., Marra, M. A., Mayo, M., Moore, R. A., Mungall, A. J., Schein, J. E., Sipahimalani, P., Tam, A., Thiessen, N., Tse, K., Wong, T., Brooks, D., Auman, J. T., Balu, S., Bodenheimer, T., Hayes, D. N., Hoyle, A. P., Jefferys, S. R., Jones, C. D., Meng, S., Mieczkowski, P. A., Mose, L. E., Perou, C. M., Perou, A. H., Roach, J., Shi, Y., Simons, J. V., Skelly, T., Soloway, M. G., Tan, D., Veluvolu, U., Parker, J. S., Wilkerson, M. D., Korkut, A., Senbabaoglu, Y., Burch, P., McWilliams, R., Chaffee, K., Oberg, A., Zhang, W., Gingras, M. C., Wheeler, D. A., Xi, L., Albert, M., Bartlett, J., Sekhon, H., Stephen, Y., Howard, Z., Judy, M., Breggia, A., Shroff, R. T., Chudamani, S., Liu, J., Lolla, L., Naresh, R., Pihl, T., Sun, Q., Wan, Y., Wu, Y., Jennifer, S., Roggin, K., Becker, K. F., Behera, M., Bennett, J., Boice, L., Burks, E., Carlotti Junior, C. G., Chabot, J., Pretti da Cunha Tirapelli, D., Sebastião dos Santos, J., Dubina, M., Eschbacher, J., Huang, M., Huelsenbeck-Dill, L., Jenkins, R., Karpov, A., Kemp, R., Lyadov, V., Maithel, S., Manikhas, G., Montgomery, E., Noushmehr, H., Osunkoya, A., Owonikoko, T., Paklina, O., Potapova, O., Ramalingam, S., Rathmell, W. K., Rieger-Christ, K., Saller, C., Setdikova, G., Shabunin, A., Sica, G., Su, T., Sullivan, T., Swanson, P., Tarvin, K., Tavobilov, M., Thorne, L. B., Urbanski, S., Voronina, O., Wang, T., Crain, D., Curley, E., Gardner, J., Mallery, D., Morris, S., Paulauskis, J., Penny, R., Shelton, C., Shelton, T., Janssen, K. P., Bathe, O., Bahary, N., Slotta-Huspenina, J., Johns, A., Hibshoosh, H., Hwang, R. F., Sepulveda, A., Radenbaugh, A., Baylin, S. B., Berrios, M., Bootwalla, M. S., Holbrook, A., Lai, P. H., Maglinte, D. T., Mahurkar, S., Triche, T. J., Van Den Berg, D. J., Weisenberger, D. J., Chin, L., Kucherlapati, R., Kucherlapati, M., Pantazi, A., Park, P., Saksena, G., Voet, D., Lin, P., Frazer, S., Defreitas, T., Meier, S., Chin, L., Kwon, S. Y., Kim, Y. H., Park, S. J., Han, S. S., Kim, S. H., Kim, H., Furth, E., Tempero, M., Sander, C., Biankin, A., Chang, D., Bailey, P., Gill, A., Kench, J., Grimmond, S., Johns, A., Cancer Genome Initiative (APGI, A. P., Postier, R., Zuna, R., Sicotte, H., Demchok, J. A., Ferguson, M. L., Hutter, C. M., Mills Shaw, K. R., Sheth, M., Sofia, H. J., Tarnuzzer, R., Wang, Z., Yang, L., Zhang, J., Felau, I. & Zenklusen, J. C., Aug 14 2017, In: Cancer cell. 32, 2, p. 185-203.e13

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      1172 Scopus citations

    • Integrated Genomic Characterization of Papillary Thyroid Carcinoma

      Agrawal, N., Akbani, R., Aksoy, B. A., Ally, A., Arachchi, H., Asa, S. L., Auman, J. T., Balasundaram, M., Balu, S., Baylin, S. B., Behera, M., Bernard, B., Beroukhim, R., Bishop, J. A., Black, A. D., Bodenheimer, T., Boice, L., Bootwalla, M. S., Bowen, J., Bowlby, R., & 223 othersBristow, C. A., Brookens, R., Brooks, D., Bryant, R., Buda, E., Butterfield, Y. S. N., Carling, T., Carlsen, R., Carter, S. L., Carty, S. E., Chan, T. A., Chen, A. Y., Cherniack, A. D., Cheung, D., Chin, L., Cho, J., Chu, A., Chuah, E., Cibulskis, K., Ciriello, G., Clarke, A., Clayman, G. L., Cope, L., Copland, J. A., Covington, K., Danilova, L., Davidsen, T., Demchok, J. A., DiCara, D., Dhalla, N., Dhir, R., Dookran, S. S., Dresdner, G., Eldridge, J., Eley, G., El-Naggar, A. K., Eng, S., Fagin, J. A., Fennell, T., Ferris, R. L., Fisher, S., Frazer, S., Frick, J., Gabriel, S. B., Ganly, I., Gao, J., Garraway, L. A., Gastier-Foster, J. M., Getz, G., Gehlenborg, N., Ghossein, R., Gibbs, R. A., Giordano, T. J., Gomez-Hernandez, K., Grimsby, J., Gross, B., Guin, R., Hadjipanayis, A., Harper, H. A., Hayes, D. N., Heiman, D. I., Herman, J. G., Hoadley, K. A., Hofree, M., Holt, R. A., Hoyle, A. P., Huang, F. W., Huang, M., Hutter, C. M., Ideker, T., Iype, L., Jacobsen, A., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Kasaian, K., Kebebew, E., Khuri, F. R., Kim, J., Kramer, R., Kreisberg, R., Kucherlapati, R., Kwiatkowski, D. J., Ladanyi, M., Lai, P. H., Laird, P. W., Lander, E., Lawrence, M. S., Lee, D., Lee, E., Lee, S., Lee, W., Leraas, K. M., Lichtenberg, T. M., Lichtenstein, L., Lin, P., Ling, S., Liu, J., Liu, W., Liu, Y., LiVolsi, V. A., Lu, Y., Ma, Y., Mahadeshwar, H. S., Marra, M. A., Mayo, M., McFadden, D. G., Meng, S., Meyerson, M., Mieczkowski, P. A., Miller, M., Mills, G., Moore, R. A., Mose, L. E., Mungall, A. J., Murray, B. A., Nikiforov, Y. E., Noble, M. S., Ojesina, A. I., Owonikoko, T. K., Ozenberger, B. A., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Paull, E. O., Pedamallu, C. S., Perou, C. M., Prins, J. F., Protopopov, A., Ramalingam, S. S., Ramirez, N. C., Ramirez, R., Raphael, B. J., Rathmell, W. K., Ren, X., Reynolds, S. M., Rheinbay, E., Ringel, M. D., Rivera, M., Roach, J., Robertson, A. G., Rosenberg, M. W., Rosenthal, M., Sadeghi, S., Saksena, G., Sander, C., Santoso, N., Schein, J. E., Schultz, N., Schumacher, S. E., Seethala, R. R., Seidman, J., Senbabaoglu, Y., Seth, S., Sharpe, S., Shaw, K. R. M., Shen, J. P., Shen, R., Sherman, S., Sheth, M., Shi, Y., Shmulevich, I., Sica, G. L., Simons, J. V., Sinha, R., Sipahimalani, P., Smallridge, R. C., Sofia, H. J., Soloway, M. G., Song, X., Sougnez, C., Stewart, C., Stojanov, P., Stuart, J. M., Sumer, S. O., Sun, Y., Tabak, B., Tam, A., Tan, D., Tang, J., Tarnuzzer, R., Taylor, B. S., Thiessen, N., Thorne, L., Thorsson, V., Tuttle, R. M., Umbricht, C. B., Van Den Berg, D. J., Vandin, F., Veluvolu, U., Verhaak, R. G. W., Vinco, M., Voet, D., Walter, V., Wang, Z., Waring, S., Weinberger, P. M., Weinhold, N., Weinstein, J. N., Weisenberger, D. J., Wheeler, D., Wilkerson, M. D., Wilson, J., Williams, M., Winer, D. A., Wise, L., Wu, J., Xi, L., Xu, A. W., Yang, L., Yang, L., Zack, T. I., Zeiger, M. A., Zeng, D., Zenklusen, J. C., Zhao, N., Zhang, H., Zhang, J., Zhang, J., Zhang, W., Zmuda, E. & Zou, L., Oct 23 2014, In: Cell. 159, 3, p. 676-690 15 p.

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      2166 Scopus citations

    • Integrated Molecular Characterization of Testicular Germ Cell Tumors

      The Cancer Genome Atlas Research Network, Jun 12 2018, In: Cell Reports. 23, 11, p. 3392-3406 15 p.

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      Open Access
      294 Scopus citations

    • Integrated Molecular Characterization of Uterine Carcinosarcoma

      Cherniack, A. D., Shen, H., Walter, V., Stewart, C., Murray, B. A., Bowlby, R., Hu, X., Ling, S., Soslow, R. A., Broaddus, R. R., Zuna, R. E., Robertson, G., Laird, P. W., Kucherlapati, R., Mills, G. B., Akbani, R., Ally, A., Auman, J. T., Balasundaram, M., Balu, S., & 130 othersBaylin, S. B., Beroukhim, R., Bodenheimer, T., Bogomolniy, F., Boice, L., Bootwalla, M. S., Bowen, J., Broaddus, R., Brooks, D., Carlsen, R., Cho, J., Chuah, E., Chudamani, S., Cibulskis, K., Cline, M., Dao, F., David, M., Demchok, J. A., Dhalla, N., Dowdy, S., Felau, I., Ferguson, M. L., Frazer, S., Frick, J., Gabriel, S., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Getz, G., Gupta, M., Haussler, D., Hayes, D. N., Heiman, D. I., Hess, J., Hoadley, K. A., Hoffmann, R., Holt, R. A., Hoyle, A. P., Huang, M., Hutter, C. M., Jefferys, S. R., Jones, S. J. M., Jones, C. D., Kanchi, R. S., Kandoth, C., Kasaian, K., Kerr, S., Kim, J., Lai, P. H., Lander, E., Lawrence, M. S., Lee, D., Leraas, K. M., Leshchiner, I., Levine, D. A., Lichtenberg, T. M., Lin, P., Liu, J., Liu, W., Liu, Y., Lolla, L., Lu, Y., Ma, Y., Maglinte, D. T., Marra, M. A., Mayo, M., Meng, S., Meyerson, M., Mieczkowski, P. A., Moore, R. A., Mose, L. E., Mungall, A. J., Mungall, K., Naresh, R., Noble, M. S., Olvera, N., Parker, J. S., Perou, C. M., Perou, A. H., Pihl, T., Radenbaugh, A. J., Ramirez, N. C., Rathmell, W. K., Roach, J., Robertson, A. G., Sadeghi, S., Saksena, G., Salvesen, H. B., Schein, J. E., Schumacher, S. E., Sheth, M., Shi, Y., Shih, J., Simons, J. V., Sipahimalani, P., Skelly, T., Sofia, H. J., Soloway, M. G., Sougnez, C., Sun, C., Tam, A., Tan, D., Tarnuzzer, R., Thiessen, N., Thorne, L. B., Tse, K., Tseng, J., Van Den Berg, D. J., Veluvolu, U., Verhaak, R. G. W., Voet, D., von Bismarck, A., Wan, Y., Wang, Z., Wang, C., Weinstein, J. N., Weisenberger, D. J., Wilkerson, M. D., Winterhoff, B., Wise, L., Wong, T., Wu, Y., Yang, L., Zenklusen, J. C., Zhang, J., Zhang, H., Zhang, W., Zhu, J. C., Zmuda, E. & Zhang, J., Mar 13 2017, In: Cancer cell. 31, 3, p. 411-423 13 p.

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      273 Scopus citations

    • Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma

      Robertson, A. G., Shih, J., Yau, C., Gibb, E. A., Oba, J., Mungall, K. L., Hess, J. M., Uzunangelov, V., Walter, V., Danilova, L., Lichtenberg, T. M., Kucherlapati, M., Kimes, P. K., Tang, M., Penson, A., Babur, O., Akbani, R., Bristow, C. A., Hoadley, K. A., Iype, L., & 150 othersChang, M. T., Abdel-Rahman, M. H., Ally, A., Auman, J. T., Balasundaram, M., Balu, S., Benz, C., Beroukhim, R., Birol, I., Bodenheimer, T., Bowen, J., Bowlby, R., Brooks, D., Carlsen, R., Cebulla, C. M., Cherniack, A. D., Chin, L., Cho, J., Chuah, E., Chudamani, S., Cibulskis, C., Cibulskis, K., Cope, L., Coupland, S. E., Defreitas, T., Demchok, J. A., Desjardins, L., Dhalla, N., Esmaeli, B., Felau, I., Ferguson, M. L., Frazer, S., Gabriel, S. B., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Gershenwald, J. E., Getz, G., Griewank, K. G., Grimm, E. A., Hayes, D. N., Hegde, A. M., Heiman, D. I., Helsel, C., Hobensack, S., Holt, R. A., Hoyle, A. P., Hu, X., Hutter, C. M., Jager, M. J., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Kandoth, C., Kasaian, K., Kim, J., Kucherlapati, R., Lander, E., Lawrence, M. S., Lazar, A. J., Lee, S., Leraas, K. M., Lin, P., Liu, J., Liu, W., Lolla, L., Lu, Y., Ma, Y., Mahadeshwar, H. S., Mariani, O., Marra, M. A., Mayo, M., Meier, S., Meng, S., Meyerson, M., Mieczkowski, P. A., Mills, G. B., Moore, R. A., Mose, L. E., Mungall, A. J., Murray, B. A., Naresh, R., Noble, M. S., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Perou, C. M., Pihl, T., Pilarski, R., Protopopov, A., Radenbaugh, A., Rai, K., Ramirez, N. C., Ren, X., Reynolds, S. M., Roach, J., Roman-Roman, S., Roszik, J., Sadeghi, S., Saksena, G., Sastre, X., Schadendorf, D., Schein, J. E., Schoenfield, L., Schumacher, S. E., Seidman, J., Seth, S., Sethi, G., Sheth, M., Shi, Y., Shields, C., Shmulevich, I., Simons, J. V., Singh, A. D., Sipahimalani, P., Skelly, T., Sofia, H., Soloway, M. G., Song, X., Stern, M. H., Stuart, J., Sun, Q., Sun, H., Tam, A., Tan, D., Tang, J., Tarnuzzer, R., Taylor, B. S., Thiessen, N., Thorsson, V., Tse, K., Veluvolu, U., Verhaak, R., Voet, D., Wan, Y., Wang, Z., Weinstein, J. N., Wilkerson, M. D., Williams, M. D., Wise, L., Woodman, S. E., Wong, T., Wu, Y., Yang, L., Yang, L., Zenklusen, J. C., Zhang, J., Zhang, H. & Zmuda, E., Aug 14 2017, In: Cancer cell. 32, 2, p. 204-220.e15

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      563 Scopus citations

    • Integrative analysis of proteomic signatures, mutations, and drug responsiveness in the NCI 60 cancer cell line set

      Park, E. S., Rabinovsky, R., Carey, M., Hennessy, B. T., Agarwal, R., Liu, W., Ju, Z., Deng, W., Lu, Y., Woo, H. G., Kim, S. B., Cheong, J. H., Garraway, L. A., Weinstein, J. N., Mills, G. B., Lee, J. S. & Davies, M. A., Feb 2010, In: Molecular cancer therapeutics. 9, 2, p. 257-267 11 p.

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      79 Scopus citations

    • Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles

      CONSORTIA, Mar 14 2017, In: Cell Reports. 18, 11, p. 2780-2794 15 p.

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      351 Scopus citations

    • Integrative molecular characterization of malignant pleural mesothelioma

      TCGA Research Network, Dec 1 2018, In: Cancer discovery. 8, 12, p. 1549-1565 17 p.

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      Open Access
      385 Scopus citations

    • Integrative pathway enrichment analysis of multivariate omics data

      PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 735.

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      Open Access
      94 Scopus citations