TY - JOUR
T1 - Biobanking in genomic medicine
AU - Zhou, Jane H.
AU - Sahin, Aysegul A.
AU - Myers, Jeffrey N.
N1 - Publisher Copyright:
© 2015, College of American Pathologists. All rights reserved.
PY - 2015/6/1
Y1 - 2015/6/1
N2 - Context.-Genomic medicine requires the identification of biomarkers and therapeutic targets, which in turn, requires high-quality biospecimens. Achieving high-quality biospecimens requires implementing standard operating procedures to control the variations of preanalytic variables in biobanking. Currently, most biobanks do not control the variations of preanalytic variables when collecting, processing, and storing their biospecimens. However, those variations have been shown to affect the quality of biospecimens and gene expression profiling. Objective.-To identify evidence-based preanalytic parameters that can be applied and those parameters that need further study. Data Sources.-We searched the Biospecimen Research and PubMed databases using defined . We retrieved and reviewed 212 articles obtained through those searches. We included 58 articles (27%) according to our inclusion and exclusion criteria for this review. Conclusion.-Preanalytic variables in biobanking can degrade the quality of biospecimens and alter gene expression profiling. Variables that require further study include the effect of surgical manipulation; the effect of warm ischemia; the allowable duration of delayed specimen processing; the optimal type, duration, and temperature of preservation and fixation; and the optimal storage duration of formalin-fixed, paraffin embedded specimens in a fit-for-purpose approach.
AB - Context.-Genomic medicine requires the identification of biomarkers and therapeutic targets, which in turn, requires high-quality biospecimens. Achieving high-quality biospecimens requires implementing standard operating procedures to control the variations of preanalytic variables in biobanking. Currently, most biobanks do not control the variations of preanalytic variables when collecting, processing, and storing their biospecimens. However, those variations have been shown to affect the quality of biospecimens and gene expression profiling. Objective.-To identify evidence-based preanalytic parameters that can be applied and those parameters that need further study. Data Sources.-We searched the Biospecimen Research and PubMed databases using defined . We retrieved and reviewed 212 articles obtained through those searches. We included 58 articles (27%) according to our inclusion and exclusion criteria for this review. Conclusion.-Preanalytic variables in biobanking can degrade the quality of biospecimens and alter gene expression profiling. Variables that require further study include the effect of surgical manipulation; the effect of warm ischemia; the allowable duration of delayed specimen processing; the optimal type, duration, and temperature of preservation and fixation; and the optimal storage duration of formalin-fixed, paraffin embedded specimens in a fit-for-purpose approach.
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U2 - 10.5858/arpa.2014-0261-RA
DO - 10.5858/arpa.2014-0261-RA
M3 - Review article
C2 - 26030251
AN - SCOPUS:84930396587
SN - 0003-9985
VL - 139
SP - 812
EP - 818
JO - Archives of Pathology and Laboratory Medicine
JF - Archives of Pathology and Laboratory Medicine
IS - 6
ER -