Codon usage pattern of differentially expressed genes in Leishmania species

Abhimanyu Kumar Singh, Ambarish Sharan Vidyarthi, Shankaracharya

Research output: Contribution to journalArticlepeer-review

1 Scopus citations

Abstract

Out of numerous genes, differentially expressed genes of Leishmania major (299) and L. infantum (241), essential for their survival, have been studied for the analysis of synonymous codon usage patterns. The role of translational selection and mutational biases were analyzed through ENc plot and correspondence analysis. Present analysis indicates that mutational pressure has a profound effect on codon usage pattern in both the species of Leishmania (with a minor variation). Beside this, natural and translational selections also operate with a proper balance that makes the organism translationally more efficient.

Original languageEnglish (US)
Pages (from-to)188-195
Number of pages8
JournalIndian Journal of Biotechnology
Volume10
Issue number2
StatePublished - Apr 2011

Keywords

  • Effective number of codons
  • L. major
  • Leishmania infantum
  • Mutational pressure
  • Relative synonymous codon usage
  • Translational selection

ASJC Scopus subject areas

  • Biotechnology
  • Bioengineering
  • Applied Microbiology and Biotechnology
  • Plant Science

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