Determining the effective sample size of a parametric prior

Satoshi Morita, Peter F. Thall, Peter Müller

Research output: Contribution to journalReview articlepeer-review

177 Scopus citations

Abstract

We present a definition for the effective sample size of a parametric prior distribution in a Bayesian model, and propose methods for computing the effective sample size in a variety of settings. Our approach first constructs a prior chosen to be vague in a suitable sense, and updates this prior to obtain a sequence of posteriors corresponding to each of a range of sample sizes. We then compute a distance between each posterior and the parametric prior, defined in terms of the curvature of the logarithm of each distribution, and the posterior minimizing the distance defines the effective sample size of the prior. For cases where the distance cannot be computed analytically, we provide a numerical approximation based on Monte Carlo simulation. We provide general guidelines for application, illustrate the method in several standard cases where the answer seems obvious, and then apply it to some nonstandard settings.

Original languageEnglish (US)
Pages (from-to)595-602
Number of pages8
JournalBiometrics
Volume64
Issue number2
DOIs
StatePublished - Jun 2008

Keywords

  • Bayesian analysis
  • Computationally intensive methods
  • Effective sample size
  • Epsilon-information prior
  • Parametric prior distribution

ASJC Scopus subject areas

  • Statistics and Probability
  • General Biochemistry, Genetics and Molecular Biology
  • General Immunology and Microbiology
  • General Agricultural and Biological Sciences
  • Applied Mathematics

MD Anderson CCSG core facilities

  • Biostatistics Resource Group

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