Easy NanoString nCounter data analysis with the NanoTube

Caleb A. Class; Caiden J. Lukan; Christopher A. Bristow; Kim Anh Do

doi:10.1093/bioinformatics/btac762

Easy NanoString nCounter data analysis with the NanoTube

Caleb A. Class, Caiden J. Lukan, Christopher A. Bristow, Kim Anh Do

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Abstract

The NanoTube is an open-source pipeline that simplifies the processing, quality control, normalization and analysis of NanoString nCounter gene expression data. It is implemented in an extensible R library, which performs a variety of gene expression analysis techniques and contains additional functions for integration with other R libraries performing advanced NanoString analysis techniques. Additionally, the NanoTube web application is available as a simple tool for researchers without programming expertise.

Original language	English (US)
Article number	btac762
Journal	Bioinformatics
Volume	39
Issue number	1
DOIs	https://doi.org/10.1093/bioinformatics/btac762
State	Published - Jan 1 2023

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

MD Anderson CCSG core facilities

Biostatistics Resource Group

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10.1093/bioinformatics/btac762

Cite this

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abstract = "The NanoTube is an open-source pipeline that simplifies the processing, quality control, normalization and analysis of NanoString nCounter gene expression data. It is implemented in an extensible R library, which performs a variety of gene expression analysis techniques and contains additional functions for integration with other R libraries performing advanced NanoString analysis techniques. Additionally, the NanoTube web application is available as a simple tool for researchers without programming expertise.",

author = "Class, {Caleb A.} and Lukan, {Caiden J.} and Bristow, {Christopher A.} and Do, {Kim Anh}",

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Easy NanoString nCounter data analysis with the NanoTube

Abstract

ASJC Scopus subject areas

MD Anderson CCSG core facilities

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