Using directed information for influence discovery in interconnected dynamical systems

Arvind Rao, Alfred O. Hero, David J. States, James Douglas Engel

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Abstract

Structure discovery in non-linear dynamical systems is an important and challenging problem that arises in various applications such as computational neuroscience, econometrics, and biological network discovery. Each of these systems have multiple interacting variables and the key problem is the inference of the underlying structure of the systems (which variables are connected to which others) based on the output observations (such as multiple time trajectories of the variables). Since such applications demand the inference of directed relationships among variables in these non-linear systems, current methods that have a linear assumption on structure or yield undirected variable dependencies are insufficient. Hence, in this work, we present a methodology for structure discovery using an informationtheoretic metric called directed time information (DTI). Using both synthetic dynamical systems as well as true biological dataseis (kidney development and T-cell data), we demonstrate the utility of DTI in such problems.

Original languageEnglish (US)
Title of host publicationAdvanced Signal Processing Algorithms, Architectures, and Implementations XVIII
DOIs
StatePublished - 2008
EventAdvanced Signal Processing Algorithms, Architectures, and Implementations XVIII - San Diego, CA, United States
Duration: Aug 10 2008Aug 11 2008

Publication series

NameProceedings of SPIE - The International Society for Optical Engineering
Volume7074
ISSN (Print)0277-786X

Other

OtherAdvanced Signal Processing Algorithms, Architectures, and Implementations XVIII
Country/TerritoryUnited States
CitySan Diego, CA
Period8/10/088/11/08

Keywords

  • Directed information
  • Mutual information
  • Transcription regulatory network

ASJC Scopus subject areas

  • Electronic, Optical and Magnetic Materials
  • Condensed Matter Physics
  • Computer Science Applications
  • Applied Mathematics
  • Electrical and Electronic Engineering

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