Juan Gallegos

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Juan Gallegos

Data Scientist

 https://orcid.org/0000-0001-9421-367X
    Calculated based on number of publications stored in Pure and citations from Scopus
    20102023

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    • 2023

      HDAC1 regulates the chromatin landscape to control transcriptional dependencies in chronic lymphocytic leukemia

      Lai, T. H., Ozer, H. G., Gasparini, P., Nigita, G., Distefano, R., Yu, L., Ravikrishnan, J., Yilmaz, S., Gallegos, J., Shukla, S., Puduvalli, V., Woyach, J., Lapalombella, R., Blachly, J., Byrd, J. C. & Sampath, D., Jun 1 2023, In: Blood Advances. 7, 12, p. 2897-2911 15 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3 Scopus citations
    • 2022

      Extensive identification of genes involved in congenital and structural heart disorders and cardiomyopathy

      IMPC Consortium & Genomics England Research Consortium, Feb 2022, In: Nature Cardiovascular Research. 1, 2, p. 157-173 17 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      16 Scopus citations
    • 2020

      Mouse mutant phenotyping at scale reveals novel genes controlling bone mineral density

      IMPC Consortium, Dec 28 2020, In: PLoS genetics. 16, 12 December, e1009190.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      16 Scopus citations

    • Soft windowing application to improve analysis of high-throughput phenotyping data

      Haselimashhadi, H., Mason, J. C., Munoz-Fuentes, V., López-Gómez, F., Babalola, K., Acar, E. F., Kumar, V., White, J., Flenniken, A. M., King, R., Straiton, E., Seavitt, J. R., Gaspero, A., Garza, A., Christianson, A. E., Hsu, C. W., Reynolds, C. L., Lanza, D. G., Lorenzo, I., Green, J. R., & 45 othersGallegos, J. J., Bohat, R., Samaco, R. C., Veeraragavan, S., Kim, J. K., Miller, G., Fuchs, H., Garrett, L., Becker, L., Kang, Y. K., Clary, D., Cho, S. Y., Tamura, M., Tanaka, N., Soo, K. D., Bezginov, A., About, G. B., Champy, M. F., Vasseur, L., Leblanc, S., Meziane, H., Selloum, M., Reilly, P. T., Spielmann, N., Maier, H., Gailus-Durner, V., Sorg, T., Hiroshi, M., Yuichi, O., Heaney, J. D., Dickinson, M. E., Wolfgang, W., Tocchini-Valentini, G. P., Lloyd, K. C. K., McKerlie, C., Seong, J. K., Yann, H., De Angelis, M. H., Brown, S. D. M., Smedley, D., Flicek, P., Mallon, A. M., Parkinson, H., Meehan, T. F. & Schwartz, R., Mar 1 2020, In: Bioinformatics. 36, 5, p. 1492-1500 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      5 Scopus citations
    • 2018

      Identification of genes required for eye development by high-throughput screening of mouse knockouts

      International Mouse Phenotyping Consortium, Dec 1 2018, In: Communications Biology. 1, 1, 236.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      29 Scopus citations

    • Identification of genetic elements in metabolism by high-throughput mouse phenotyping

      Rozman, J., Rathkolb, B., Oestereicher, M. A., Schütt, C., Ravindranath, A. C., Leuchtenberger, S., Sharma, S., Kistler, M., Willershäuser, M., Brommage, R., Meehan, T. F., Mason, J., Haselimashhadi, H., Aguilar-Pimentel, A., Becker, L., Treise, I., Moreth, K., Garrett, L., Hölter, S. M., Zimprich, A., & 246 othersMarschall, S., Amarie, O. V., Calzada-Wack, J., Neff, F., Brachthäuser, L., Lengger, C., Stoeger, C., Zapf, L., Cho, Y. L., Da Silva-Buttkus, P., Kraiger, M. J., Mayer-Kuckuk, P., Gampe, K. K., Wu, M., Conte, N., Warren, J., Chen, C. K., Tudose, I., Relac, M., Matthews, P., Cater, H. L., Natukunda, H. P., Cleak, J., Teboul, L. M., Clementson-Mobbs, S., Szoke-Kovacs, Z., Walling, A. P., Johnson, S. J., Codner, G. F., Fiegel, T., Ring, N., Westerberg, H., Greenaway, S., Sneddon, D., Morgan, H., Loeffler, J., Stewart, M. E., Ramirez-Solis, R., Bradley, A., Skarnes, W. C., Steel, K. P., Maguire, S. A., Dench, J., Lafont, D., Vancollie, V. E., Pearson, S. A., Gates, A. S., Sanderson, M., Shannon, C., Anthony, L. F. E., Sumowski, M. T., McLaren, R. S. B., Doe, B., Wardle-Jones, H., Griffiths, M. N. D., Galli, A., Swiatkowska, A., Isherwood, C. M., Speak, A. O., Cambridge, E. L., Wilson, H. M., Caetano, S. S., Maguire, A. K. B., Adams, D. J., Bottomley, J., Ryder, E., Gleeson, D., Pouilly, L., Rousseau, S., Auburtin, A., Reilly, P., Ayadi, A., Selloum, M., Wood, J. A., Clary, D., Havel, P., Tolentino, T., Tolentino, H., Schuchbauer, M., Pedroia, S., Trainor, A., Djan, E., Pham, M., Huynh, A., De Vera, V., Seavitt, J., Gallegos, J., Garza, A., Mangin, E., Senderstrom, J., Lazo, I., Mowrey, K., Bohat, R., Samaco, R., Veeraragavan, S., Beeton, C., Kalaga, S., Kelsey, L., Vukobradovic, I., Berberovic, Z., Owen, C., Qu, D., Guo, R., Newbigging, S., Morikawa, L., Law, N., Shang, X., Feugas, P., Wang, Y., Eskandarian, M., Zhu, Y., Penton, P., Laurin, V., Clarke, S., Lan, Q., Sleep, G., Creighton, A., Jacob, E., Danisment, O., Gertsenstein, M., Pereira, M., MacMaster, S., Tondat, S., Carroll, T., Cabezas, J., Hunter, J., Clark, G., Bubshait, M., Miller, D., Sohel, K., Adissu, H., Ganguly, M., Bezginov, A., Chiani, F., Di Pietro, C., Di Segni, G., Ermakova, O., Ferrara, F., Fruscoloni, P., Gambadoro, A., Gastaldi, S., Golini, E., La Sala, G., Mandillo, S., Marazziti, D., Massimi, M., Matteoni, R., Orsini, T., Pasquini, M., Raspa, M., Rauch, A., Rossi, G., Rossi, N., Putti, S., Scavizzi, F., Tocchini-Valentini, G. D., Wakana, S., Suzuki, T., Tamura, M., Kaneda, H., Furuse, T., Kobayashi, K., Miura, I., Yamada, I., Obata, Y., Yoshiki, A., Ayabe, S., Chambers, J. N., Chalupsky, K., Seisenberger, C., Bürger, A., Beig, J., Kühn, R., Hörlein, A., Schick, J., Oritz, O., Giesert, F., Graw, J., Ollert, M., Schmidt-Weber, C., Stoeger, T., Önder Yildirim, A., Eickelberg, O., Klopstock, T., Busch, D. H., Bekeredjian, R., Zimmer, A., Jacobsen, J. O., Smedley, D., Dickinson, M. E., Benso, F., Morse, I., Kim, H. C., Lee, H., Cho, S. Y., Hough, T., Mallon, A. M., Wells, S., Santos, L., Lelliott, C. J., White, J. K., Sorg, T., Champy, M. F., Bower, L. R., Reynolds, C. L., Flenniken, A. M., Murray, S. A., Nutter, L. M. J., Svenson, K. L., West, D., Tocchini-Valentini, G. P., Beaudet, A. L., Bosch, F., Braun, R. B., Dobbie, M. S., Gao, X., Herault, Y., Moshiri, A., Moore, B. A., Kent Lloyd, K. C., McKerlie, C., Masuya, H., Tanaka, N., Flicek, P., Parkinson, H. E., Sedlacek, R., Seong, J. K., Wang, C. K. L., Moore, M., Brown, S. D., Tschöp, M. H., Wurst, W., Klingenspor, M., Wolf, E., Beckers, J., MacHicao, F., Peter, A., Staiger, H., Häring, H. U., Grallert, H., Campillos, M., Maier, H., Fuchs, H., Gailus-Durner, V., Werner, T. & De Angelis, M. H., Dec 1 2018, In: Nature communications. 9, 1, 288.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      54 Scopus citations
    • 2017

      Disease model discovery from 3,328 gene knockouts by the International Mouse Phenotyping Consortium

      Meehan, T. F., Conte, N., West, D. B., Jacobsen, J. O., Mason, J., Warren, J., Chen, C. K., Tudose, I., Relac, M., Matthews, P., Karp, N., Santos, L., Fiegel, T., Ring, N., Westerberg, H., Greenaway, S., Sneddon, D., Morgan, H., Codner, G. F., Stewart, M. E., & 43 othersBrown, J., Horner, N., Haendel, M., Washington, N., Mungall, C. J., Reynolds, C. L., Gallegos, J., Gailus-Durner, V., Sorg, T., Pavlovic, G., Bower, L. R., Moore, M., Morse, I., Gao, X., Tocchini-Valentini, G. P., Obata, Y., Cho, S. Y., Seong, J. K., Seavitt, J., Beaudet, A. L., Dickinson, M. E., Herault, Y., Wurst, W., De Angelis, M. H., Kent Lloyd, K. C., Flenniken, A. M., Nutter, L. M. J., Newbigging, S., McKerlie, C., Justice, M. J., Murray, S. A., Svenson, K. L., Braun, R. E., White, J. K., Bradley, A., Flicek, P., Wells, S., Skarnes, W. C., Adams, D. J., Parkinson, H., Mallon, A. M., Brown, S. D. M. & Smedley, D., Aug 1 2017, In: Nature Genetics. 49, 8, p. 1231-1238 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      173 Scopus citations
    • 2016

      High-throughput discovery of novel developmental phenotypes

      The International Mouse Phenotyping Consortium, Sep 14 2016, In: Nature. 537, 7621, p. 508-514 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      782 Scopus citations
    • 2015

      PAND: A distribution to identify functional linkage from networks with preferential attachment property

      Li, H., Tong, P., Gallegos, J., Dimmer, E., Cai, G., Molldrem, J. J. & Liang, S., Jul 9 2015, In: PloS one. 10, 7, e0127968.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2 Scopus citations
    • 2012

      DsPIG: A tool to predict imprinted genes from the deep sequencing of whole transcriptomes

      Li, H., Su, X., Gallegos, J., Lu, Y., Ji, Y., Molldrem, J. J. & Liang, S., Oct 19 2012, In: BMC bioinformatics. 13, 1, 271.

      Research output: Contribution to journal › Article › peer-review

      9 Scopus citations

    • SINE retrotransposons cause epigenetic reprogramming of adjacent gene promoters

      Estécio, M. R. H., Gallegos, J., Dekmezian, M., Lu, Y., Liang, S. & Issa, J. P. J., Oct 2012, In: Molecular Cancer Research. 10, 10, p. 1332-1342 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      56 Scopus citations
    • 2010

      Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer

      Estécio, M. R. H., Gallegos, J., Vallot, C., Castoro, R. J., Chung, W., Maegawa, S., Oki, Y., Kondo, Y., Jelinek, J., Shen, L., Hartung, H., Aplan, P. D., Czerniak, B. A., Liang, S. & Issa, J. P. J., Oct 2010, In: Genome research. 20, 10, p. 1369-1382 14 p.

      Research output: Contribution to journal › Article › peer-review

      70 Scopus citations