Yiling Lu

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Yiling Lu

Professor

 https://orcid.org/0000-0002-3662-2106
    Calculated based on number of publications stored in Pure and citations from Scopus
    1990 …2023

    Research activity per year

    Search results

    • 2018

      Erratum: The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma (Cell Reports (2018) 23(1) (313–326.e5) (S2211124718304364) (10.1016/j.celrep.2018.03.075))

      The Cancer Genome Atlas Research Network, Jun 19 2018, In: Cell Reports. 23, 12, p. 3698 1 p.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access
      96 Scopus citations

    • Exosomal PD-L1 contributes to immunosuppression and is associated with anti-PD-1 response

      Chen, G., Huang, A. C., Zhang, W., Zhang, G., Wu, M., Xu, W., Yu, Z., Yang, J., Wang, B., Sun, H., Xia, H., Man, Q., Zhong, W., Antelo, L. F., Wu, B., Xiong, X., Liu, X., Guan, L., Li, T., Liu, S., & 19 othersYang, R., Lu, Y., Dong, L., McGettigan, S., Somasundaram, R., Radhakrishnan, R., Mills, G., Lu, Y., Kim, J., Chen, Y. H., Dong, H., Zhao, Y., Karakousis, G. C., Mitchell, T. C., Schuchter, L. M., Herlyn, M., Wherry, E. J., Xu, X. & Guo, W., Aug 16 2018, In: Nature. 560, 7718, p. 382-386 5 p.

      Research output: Contribution to journal › Article › peer-review

      1747 Scopus citations

    • Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 194-212.e6

      Research output: Contribution to journal › Article › peer-review

      Open Access
      216 Scopus citations

    • Genomic and Functional Approaches to Understanding Cancer Aneuploidy

      The Cancer Genome Atlas Research Network, Apr 9 2018, In: Cancer cell. 33, 4, p. 676-689.e3

      Research output: Contribution to journal › Article › peer-review

      Open Access
      576 Scopus citations

    • Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 239-254.e6

      Research output: Contribution to journal › Article › peer-review

      Open Access
      663 Scopus citations

    • Implementation of a Multiplex and Quantitative Proteomics Platform for Assessing Protein Lysates Using DNA-Barcoded Antibodies

      Lee, J., Geiss, G. K., Demirkan, G., Vellano, C. P., Filanoski, B., Lu, Y., Ju, Z., Yu, S., Guo, H., Bogatzki, L. Y., Carter, W., Meredith, R. K., Krishnamurthy, S., Ding, Z., Beechem, J. M. & Mills, G. B., Jun 2018, In: Molecular and Cellular Proteomics. 17, 6, p. 1245-1258 14 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      16 Scopus citations

    • Induction of telomere dysfunction prolongs disease control of therapy-resistant melanoma

      Zhang, G., Wu, L. W., Mender, I., Barzily-Rokni, M., Hammond, M. R., Ope, O., Cheng, C., Vasilopoulos, T., Randell, S., Sadek, N., Beroard, A., Xiao, M., Tian, T., Tan, J., Saeed, U., Sugarman, E., Krepler, C., Brafford, P., Sproesser, K., Murugan, S., & 24 othersSomasundaram, R., Garman, B., Wubbenhorst, B., Woo, J., Yin, X., Liu, Q., Frederick, D. T., Miao, B., Xu, W., Karakousis, G. C., Xu, X., Schuchter, L. M., Mitchell, T. C., Kwong, L. N., Amaravadi, R. K., Lu, Y., Boland, G. M., Wei, Z., Nathanson, K., Herbig, U., Mills, G. B., Flaherty, K. T., Herlyn, M. & Shay, J. W., Oct 1 2018, In: Clinical Cancer Research. 24, 19, p. 4771-4784 14 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      28 Scopus citations

    • Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 213-226.e3

      Research output: Contribution to journal › Article › peer-review

      Open Access
      73 Scopus citations

    • Integrated Molecular Characterization of Testicular Germ Cell Tumors

      The Cancer Genome Atlas Research Network, Jun 12 2018, In: Cell Reports. 23, 11, p. 3392-3406 15 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      294 Scopus citations

    • Integrative molecular characterization of malignant pleural mesothelioma

      TCGA Research Network, Dec 1 2018, In: Cancer discovery. 8, 12, p. 1549-1565 17 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      385 Scopus citations

    • lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer

      The Cancer Genome Atlas Research Network, Apr 9 2018, In: Cancer cell. 33, 4, p. 706-720.e9

      Research output: Contribution to journal › Article › peer-review

      Open Access
      358 Scopus citations

    • Loss of Phd2 cooperates with BRAF V600E to drive melanomagenesis

      Liu, S., Zhang, G., Guo, J., Chen, X., Lei, J., Ze, K., Dong, L., Dai, X., Gao, Y., Song, D., Ecker, B., Yang, R., Feltcher, C., Peng, K., Feng, C., Chen, H., Lee, R. X., Kerestes, H., Niu, J., Kumar, S., & 15 othersXu, W., Zhang, J., Wei, Z., Martin, J. S., Liu, X., Mills, G., Lu, Y., Guo, W., Sun, L., Zhang, L., Weeraratna, A., Herlyn, M., Wei, W., Lee, F. S. & Xu, X., Dec 1 2018, In: Nature communications. 9, 1, 5426.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      12 Scopus citations

    • Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 172-180.e3

      Research output: Contribution to journal › Article › peer-review

      Open Access
      97 Scopus citations

    • Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation

      The Cancer Genome Atlas Research Network, Apr 5 2018, In: Cell. 173, 2, p. 338-354.e15

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1193 Scopus citations

    • Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 255-269.e4

      Research output: Contribution to journal › Article › peer-review

      Open Access
      172 Scopus citations

    • Multi-omics analysis reveals neoantigen-independent immune cell infiltration in copy-number driven cancers

      McGrail, D. J., Federico, L., Li, Y., Dai, H., Lu, Y., Mills, G. B., Yi, S., Lin, S. Y. & Sahni, N., Dec 1 2018, In: Nature communications. 9, 1, 1317.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      76 Scopus citations

    • Oncogenic Signaling Pathways in The Cancer Genome Atlas

      The Cancer Genome Atlas Research Network, Apr 5 2018, In: Cell. 173, 2, p. 321-337.e10

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1748 Scopus citations

    • Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

      The Cancer Genome Atlas Network, Mar 28 2018, In: Cell Systems. 6, 3, p. 282-300.e2

      Research output: Contribution to journal › Article › peer-review

      Open Access
      240 Scopus citations

    • Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 297-312.e12

      Research output: Contribution to journal › Article › peer-review

      Open Access
      189 Scopus citations

    • Pathogenic Germline Variants in 10,389 Adult Cancers

      The Cancer Genome Atlas Research Network, Apr 5 2018, In: Cell. 173, 2, p. 355-370.e14

      Research output: Contribution to journal › Article › peer-review

      Open Access
      507 Scopus citations

    • Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

      The Cancer Genome Atlas Research Network, Apr 5 2018, In: Cell. 173, 2, p. 305-320.e10

      Research output: Contribution to journal › Article › peer-review

      Open Access
      218 Scopus citations

    • Predicting high-risk endometrioid carcinomas using proteins

      Du, D., Ma, W., Yates, M. S., Chen, T., Lu, K. H., Lu, Y., Weinstein, J. N., Broaddus, R. R., Mills, G. B. & Liu, Y., Apr 13 2018, In: Oncotarget. 9, 28, p. 19704-19715 12 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      5 Scopus citations

    • Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

      MC3 Working Group & The Cancer Genome Atlas Research Network, Mar 28 2018, In: Cell Systems. 6, 3, p. 271-281.e7

      Research output: Contribution to journal › Article › peer-review

      Open Access
      446 Scopus citations

    • Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 282-296.e4

      Research output: Contribution to journal › Article › peer-review

      Open Access
      268 Scopus citations

    • Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 181-193.e7

      Research output: Contribution to journal › Article › peer-review

      Open Access
      585 Scopus citations

    • Systematic Analysis of Splice-Site-Creating Mutations in Cancer

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 270-281.e3

      Research output: Contribution to journal › Article › peer-review

      Open Access
      159 Scopus citations

    • Systematic Functional Annotation of Somatic Mutations in Cancer

      Ng, P. K. S., Li, J., Jeong, K. J., Shao, S., Chen, H., Tsang, Y. H., Sengupta, S., Wang, Z., Bhavana, V. H., Tran, R., Soewito, S., Minussi, D. C., Moreno, D., Kong, K., Dogruluk, T., Lu, H., Gao, J., Tokheim, C., Zhou, D. C., Johnson, A. M., & 20 othersZeng, J., Ip, C. K. M., Ju, Z., Wester, M., Yu, S., Li, Y., Vellano, C. P., Schultz, N., Karchin, R., Ding, L., Lu, Y., Cheung, L. W. T., Chen, K., Shaw, K. R., Meric-Bernstam, F., Scott, K. L., Yi, S., Sahni, N., Liang, H. & Mills, G. B., Mar 12 2018, In: Cancer cell. 33, 3, p. 450-462.e10

      Research output: Contribution to journal › Article › peer-review

      Open Access
      171 Scopus citations

    • Systems biology approach reveals a link between mTORC1 and G2/M DNA damage checkpoint recovery

      Hsieh, H. J., Zhang, W., Lin, S. H., Yang, W. H., Wang, J. Z., Shen, J., Zhang, Y., Lu, Y., Wang, H., Yu, J., Mills, G. B. & Peng, G., Dec 1 2018, In: Nature communications. 9, 1, 3982.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      26 Scopus citations

    • The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma

      The Cancer Genome Atlas Research Network, Apr 3 2018, In: Cell Reports. 23, 1, p. 313-326.e5

      Research output: Contribution to journal › Article › peer-review

      Open Access
      514 Scopus citations

    • The Immune Landscape of Cancer

      The Cancer Genome Atlas Research Network, Apr 17 2018, In: Immunity. 48, 4, p. 812-830.e14

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3139 Scopus citations

    • The Integrated Genomic Landscape of Thymic Epithelial Tumors

      The Cancer Genome Atlas Network, Feb 12 2018, In: Cancer cell. 33, 2, p. 244-258.e10

      Research output: Contribution to journal › Article › peer-review

      Open Access
      250 Scopus citations
    • 2017

      A Comprehensive Patient-Derived Xenograft Collection Representing the Heterogeneity of Melanoma

      Krepler, C., Sproesser, K., Brafford, P., Beqiri, M., Garman, B., Xiao, M., Shannan, B., Watters, A., Perego, M., Zhang, G., Vultur, A., Yin, X., Liu, Q., Anastopoulos, I. N., Wubbenhorst, B., Wilson, M. A., Xu, W., Karakousis, G., Feldman, M., Xu, X., & 34 othersAmaravadi, R., Gangadhar, T. C., Elder, D. E., Haydu, L. E., Wargo, J. A., Davies, M. A., Lu, Y., Mills, G. B., Frederick, D. T., Barzily-Rokni, M., Flaherty, K. T., Hoon, D. S., Guarino, M., Bennett, J. J., Ryan, R. W., Petrelli, N. J., Shields, C. L., Terai, M., Sato, T., Aplin, A. E., Roesch, A., Darr, D., Angus, S., Kumar, R., Halilovic, E., Caponigro, G., Jeay, S., Wuerthner, J., Walter, A., Ocker, M., Boxer, M. B., Schuchter, L., Nathanson, K. L. & Herlyn, M., Nov 14 2017, In: Cell Reports. 21, 7, p. 1953-1967 15 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      102 Scopus citations

    • A CpG island methylator phenotype in acute myeloid leukemia independent of IDH mutations and associated with a favorable outcome

      Kelly, A. D., Kroeger, H., Yamazaki, J., Taby, R., Neumann, F., Yu, S., Lee, J. T., Patel, B., Li, Y., He, R., Liang, S., Lu, Y., Cesaroni, M., Pierce, S. A., Kornblau, S. M., Bueso-Ramos, C. E., Ravandi, F., Kantarjian, H. M., Jelinek, J. & Issa, J. P. J., Oct 1 2017, In: Leukemia. 31, 10, p. 2011-2019 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      32 Scopus citations

    • A murine preclinical syngeneic transplantation model for breast cancer precision medicine

      Federico, L., Chong, Z., Zhang, D., McGrail, D. J., Zhao, W., Jeong, K. J., Vellano, C. P., Ju, Z., Gagea, M., Liu, S., Mitra, S., Dennison, J. B., Lorenzi, P. L., Cardnell, R., Diao, L., Wang, J., Lu, Y., Byers, L. A., Perou, C. M., Lin, S. Y., & 1 othersMills, G. B., Apr 2017, In: Science Advances. 3, 4, e1600957.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      11 Scopus citations

    • A patient-derived-xenograft platform to study BRCA-deficient ovarian cancers

      George, E., Kim, H., Krepler, C., Wenz, B., Makvandi, M., Tanyi, J. L., Brown, E., Zhang, R., Brafford, P., Jean, S., Mach, R. H., Lu, Y., Mills, G. B., Herlyn, M., Morgan, M., Zhang, X., Soslow, R., Drapkin, R., Johnson, N., Zheng, Y., & 3 othersCotsarelis, G., Nathanson, K. L. & Simpkins, F., Jan 12 2017, In: JCI Insight. 2, 1, e89760.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      50 Scopus citations

    • A unified approach to targeting the lysosome’s degradative and growth signaling roles

      Rebecca, V. W., Nicastri, M. C., McLaughlin, N., Fennelly, C., McAfee, Q., Ronghe, A., Nofal, M., Lim, C. Y., Witze, E., Chude, C. I., Zhang, G., Alicea, G. M., Piao, S., Murugan, S., Ojha, R., Levi, S. M., Wei, Z., Barber-Rotenberg, J. S., Murphy, M. E., Mills, G. B., & 12 othersLu, Y., Rabinowitz, J., Marmorstein, R., Liu, Q., Liu, S., Xu, X., Herlyn, M., Zoncu, R., Brady, D. C., Speicher, D. W., Winkler, J. D. & Amaravadi, R. K., Nov 2017, In: Cancer discovery. 7, 11, p. 1266-1283 18 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      146 Scopus citations

    • Characterization of Human Cancer Cell Lines by Reverse-phase Protein Arrays

      Li, J., Zhao, W., Akbani, R., Liu, W., Ju, Z., Ling, S., Vellano, C. P., Roebuck, P., Yu, Q., Eterovic, A. K., Byers, L. A., Davies, M. A., Deng, W., Gopal, Y. N. V., Chen, G., von Euw, E. M., Slamon, D., Conklin, D., Heymach, J. V., Gazdar, A. F., & 5 othersMinna, J. D., Myers, J. N., Lu, Y., Mills, G. B. & Liang, H., Feb 13 2017, In: Cancer cell. 31, 2, p. 225-239 15 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      152 Scopus citations

    • Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas

      The Cancer Genome Atlas Research Network, Nov 2 2017, In: Cell. 171, 4, p. 950-965.e28

      Research output: Contribution to journal › Article › peer-review

      Open Access
      624 Scopus citations

    • Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma

      The Cancer Genome Atlas Research Network, Jun 15 2017, In: Cell. 169, 7, p. 1327-1341.e23

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1430 Scopus citations

    • Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer

      Robertson, A. G., Kim, J., Al-Ahmadie, H., Bellmunt, J., Guo, G., Cherniack, A. D., Hinoue, T., Laird, P. W., Hoadley, K. A., Akbani, R., Castro, M. A. A., Gibb, E. A., Kanchi, R. S., Gordenin, D. A., Shukla, S. A., Sanchez-Vega, F., Hansel, D. E., Czerniak, B. A., Reuter, V. E., Su, X., & 153 othersde Sa Carvalho, B., Chagas, V. S., Mungall, K. L., Sadeghi, S., Pedamallu, C. S., Lu, Y., Klimczak, L. J., Zhang, J., Choo, C., Ojesina, A. I., Bullman, S., Leraas, K. M., Lichtenberg, T. M., Wu, C. J., Schultz, N., Getz, G., Meyerson, M., Mills, G. B., McConkey, D. J., Albert, M., Alexopoulou, I., Ally, A., Antic, T., Aron, M., Balasundaram, M., Bartlett, J., Baylin, S. B., Beaver, A., Birol, I., Boice, L., Bootwalla, M. S., Bowen, J., Bowlby, R., Brooks, D., Broom, B. M., Bshara, W., Burks, E., Cárcano, F. M., Carlsen, R., Carvalho, A. L., Castle, E. P., Castro, P., Catto, J. W., Chesla, D. W., Chuah, E., Chudamani, S., Cortessis, V. K., Cottingham, S. L., Crain, D., Curley, E., Daneshmand, S., Demchok, J. A., Dhalla, N., Djaladat, H., Eckman, J., Egea, S. C., Engel, J., Felau, I., Ferguson, M. L., Gardner, J., Gastier-Foster, J. M., Gerken, M., Gomez-Fernandez, C. R., Harr, J., Hartmann, A., Herbert, L. M., Ho, T. H., Holt, R. A., Hutter, C. M., Jones, S. J. M., Jorda, M., Kahnoski, R. J., Kasaian, K., Kwiatkowski, D. J., Lai, P. H., Lane, B. R., Lerner, S. P., Liu, J., Lolla, L., Lotan, Y., Lucchesi, F. R., Ma, Y., Machado, R. D., Maglinte, D. T., Mallery, D., Marra, M. A., Martin, S. E., Mayo, M., Meraney, A., Moinzadeh, A., Moore, R. A., Mora Pinero, E. M., Morris, S., Morrison, C., Mungall, A. J., Myers, J. B., Naresh, R., O'Donnell, P. H., Parekh, D. J., Parfitt, J., Paulauskis, J. D., Sekhar Pedamallu, C., Penny, R. J., Pihl, T., Porten, S., Quintero-Aguilo, M. E., Ramirez, N. C., Rathmell, W. K., Rieger-Christ, K., Saller, C., Salner, A., Sandusky, G., Scapulatempo-Neto, C., Schein, J. E., Schuckman, A. K., Shelton, C., Shelton, T., Simko, J., Singh, P., Sipahimalani, P., Smith, N. D., Sofia, H. J., Sorcini, A., Stanton, M. L., Steinberg, G. D., Stoehr, R., Su, X., Sullivan, T., Sun, Q., Tam, A., Tarnuzzer, R., Tarvin, K., Taubert, H., Thiessen, N., Thorne, L., Tse, K., Tucker, K., Van Den Berg, D. J., van Kessel, K. E., Wach, S., Wan, Y., Wang, Z., Weinstein, J. N., Weisenberger, D. J., Wise, L., Wong, T., Wu, Y., Yang, L., Zach, L. A., Zenklusen, J. C., Zhang, J., Zmuda, E. & Zwarthoff, E. C., Oct 19 2017, In: Cell. 171, 3, p. 540-556.e25

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1467 Scopus citations

    • Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma

      Fishbein, L., Leshchiner, I., Walter, V., Danilova, L., Robertson, A. G., Johnson, A. R., Lichtenberg, T. M., Murray, B. A., Ghayee, H. K., Else, T., Ling, S., Jefferys, S. R., de Cubas, A. A., Wenz, B., Korpershoek, E., Amelio, A. L., Makowski, L., Rathmell, W. K., Gimenez-Roqueplo, A. P., Giordano, T. J., & 187 othersAsa, S. L., Tischler, A. S., Akbani, R., Ally, A., Amar, L., Arachchi, H., Auchus, R. J., Auman, J. T., Baertsch, R., Balasundaram, M., Balu, S., Bartsch, D. K., Baudin, E., Bauer, T., Beaver, A., Benz, C., Beroukhim, R., Beuschlein, F., Bodenheimer, T., Boice, L., Bowen, J., Bowlby, R., Brooks, D., Carlsen, R., Carter, S., Cassol, C. A., Cherniack, A. D., Chin, L., Cho, J., Chuah, E., Chudamani, S., Cope, L., Crain, D., Curley, E., de Krijger, R. R., Demchok, J. A., Deutschbein, T., Dhalla, N., Dimmock, D., Dinjens, W. N. M., Eng, C., Eschbacher, J., Fassnacht, M., Felau, I., Feldman, M., Ferguson, M. L., Fiddes, I., Frazer, S., Gabriel, S. B., Gardner, J., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Getz, G., Geurts, J., Goldman, M., Graim, K., Gupta, M., Haan, D., Hahner, S., Hantel, C., Haussler, D., Hayes, D. N., Heiman, D. I., Hoadley, K. A., Holt, R. A., Hoyle, A. P., Huang, M., Hunt, B., Hutter, C. M., Jones, S. J. M., Jones, C. D., Kasaian, K., Kebebew, E., Kim, J., Kimes, P., Knijnenburg, T., Lander, E., Lawrence, M. S., Lechan, R., Lee, D., Leraas, K. M., Lerario, A., Lin, P., Liu, J., LiVolsi, V. A., Lolla, L., Lotan, Y., Lu, Y., Ma, Y., Maison, N., Mallery, D., Mannelli, M., Marquard, J., Marra, M. A., Matthew, T., Mayo, M., Méatchi, T., Meng, S., Merino, M. J., Mete, O., Meyerson, M., Mieczkowski, P. A., Mills, G. B., Moore, R. A., Morozova, O., Morris, S., Mose, L. E., Mungall, A. J., Naresh, R., Nathanson, K. L., Newton, Y., Ng, S., Ni, Y., Noble, M. S., Nwariaku, F., Pacak, K., Parker, J. S., Paul, E., Penny, R., Perou, C. M., Perou, A. H., Pihl, T., Powers, J., Rabaglia, J., Radenbaugh, A., Ramirez, N. C., Rao, A., Riester, A., Roach, J., Sadeghi, S., Saksena, G., Salama, S., Saller, C., Sandusky, G., Sbiera, S., Schein, J. E., Schumacher, S. E., Shelton, C., Shelton, T., Sheth, M., Shi, Y., Shih, J., Shmulevich, I., Simons, J. V., Sipahimalani, P., Skelly, T., Sofia, H. J., Sokolov, A., Soloway, M. G., Sougnez, C., Stuart, J., Sun, C., Swatloski, T., Tam, A., Tan, D., Tarnuzzer, R., Tarvin, K., Thiessen, N., Thorne, L. B., Timmers, H. J., Tse, K., Uzunangelov, V., van Berkel, A., Veluvolu, U., Vicha, A., Voet, D., Waldmann, J., Wan, Y., Wang, Z., Wang, T. S., Weaver, J., Weinstein, J. N., Weismann, D., Wilkerson, M. D., Wise, L., Wong, T., Wong, C., Wu, Y., Yang, L., Zelinka, T., Zenklusen, J. C., Zhang, J., Zhang, W., Zhu, J., Zinzindohoué, F. & Zmuda, E., Feb 13 2017, In: Cancer cell. 31, 2, p. 181-193 13 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      500 Scopus citations

    • Context Specificity in Causal Signaling Networks Revealed by Phosphoprotein Profiling

      Hill, S. M., Nesser, N. K., Johnson-Camacho, K., Jeffress, M., Johnson, A., Boniface, C., Spencer, S. E. F., Lu, Y., Heiser, L. M., Lawrence, Y., Pande, N. T., Korkola, J. E., Gray, J. W., Mills, G. B., Mukherjee, S. & Spellman, P. T., Jan 25 2017, In: Cell Systems. 4, 1, p. 73-83.e10

      Research output: Contribution to journal › Article › peer-review

      Open Access
      25 Scopus citations

    • Corilagin sensitizes epithelial ovarian cancer to chemotherapy by inhibiting Snail-glycolysis pathways

      Jia, L., Zho, J., Zhao, H., Yanjin, H., Lv, M., Zhao, N., Zheng, Z., Lu, Y., Ming, Y. & Yu, Y., Oct 2017, In: Oncology reports. 38, 4, p. 2464-2470 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      21 Scopus citations

    • Correction: Decoupling of the PI3K pathway via mutation necessitates combinatorial treatment in HER2+ breast cancer (PLoS ONE (2015) 10:7 (e0133219) DOI: 10.1371/journal.pone.0133219)

      Korkola, J. E., Collisson, E. A., Heiser, L. M., Oates, C., Bayani, N., Itani, S., Esch, A., Thompson, W., Griffith, O. L., Wang, N. J., Kuo, W. L., Cooper, B., Billig, J., Ziyad, S., Hung, J. L., Jakkula, L., Feiler, H., Lu, Y., Mills, G. B., Spellman, P. T., & 3 othersTomlin, C., Mukherjee, S. & Gray, J. W., Oct 2017, In: PloS one. 12, 10, e0186551.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access

    • Erratum: Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles (Cell Reports (2017) 18(11) (2780–2794) (S2211124717302140) (10.1016/j.celrep.2017.02.033))

      The Cancer Genome Atlas Network, Jun 27 2017, In: Cell Reports. 19, 13, p. 2878-2880 3 p.

      Research output: Contribution to journal › Comment/debate › peer-review

      Open Access
      130 Scopus citations

    • Explore, visualize, and analyze functional cancer proteomic data using the cancer proteome atlas

      Li, J., Akbani, R., Zhao, W., Lu, Y., Weinstein, J. N., Mills, G. B. & Liang, H., Nov 1 2017, In: Cancer Research. 77, 21, p. e51-e54

      Research output: Contribution to journal › Article › peer-review

      Open Access
      75 Scopus citations

    • Improved prediction of PARP inhibitor response and identification of synergizing agents through use of a novel gene expression signature generation algorithm

      McGrail, D. J., Lin, C. C. J., Garnett, J., Liu, Q., Mo, W., Dai, H., Lu, Y., Yu, Q., Ju, Z., Yin, J., Vellano, C. P., Hennessy, B., Mills, G. B. & Lin, S. Y., Dec 1 2017, In: npj Systems Biology and Applications. 3, 1, 8.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      45 Scopus citations

    • Integrated genomic and molecular characterization of cervical cancer

      The Cancer Genome Atlas Research Network, Mar 16 2017, In: Nature. 543, 7645, p. 378-384 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      985 Scopus citations

    • Integrated genomic characterization of oesophageal carcinoma

      The Cancer Genome Atlas Research Network, Jan 12 2017, In: Nature. 541, 7636, p. 169-174 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1195 Scopus citations

    • Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma

      Raphael, B. J., Hruban, R. H., Aguirre, A. J., Moffitt, R. A., Yeh, J. J., Stewart, C., Robertson, A. G., Cherniack, A. D., Gupta, M., Getz, G., Gabriel, S. B., Meyerson, M., Cibulskis, C., Fei, S. S., Hinoue, T., Shen, H., Laird, P. W., Ling, S., Lu, Y., Mills, G. B., & 251 othersAkbani, R., Loher, P., Londin, E. R., Rigoutsos, I., Telonis, A. G., Gibb, E. A., Goldenberg, A., Mezlini, A. M., Hoadley, K. A., Collisson, E., Lander, E., Murray, B. A., Hess, J., Rosenberg, M., Bergelson, L., Zhang, H., Cho, J., Tiao, G., Kim, J., Livitz, D., Leshchiner, I., Reardon, B., Van Allen, E., Kamburov, A., Beroukhim, R., Saksena, G., Schumacher, S. E., Noble, M. S., Heiman, D. I., Gehlenborg, N., Kim, J., Lawrence, M. S., Adsay, V., Petersen, G., Klimstra, D., Bardeesy, N., Leiserson, M. D. M., Bowlby, R., Kasaian, K., Birol, I., Mungall, K. L., Sadeghi, S., Weinstein, J. N., Spellman, P. T., Liu, Y., Amundadottir, L. T., Tepper, J., Singhi, A. D., Dhir, R., Paul, D., Smyrk, T., Zhang, L., Kim, P., Bowen, J., Frick, J., Gastier-Foster, J. M., Gerken, M., Lau, K., Leraas, K. M., Lichtenberg, T. M., Ramirez, N. C., Renkel, J., Sherman, M., Wise, L., Yena, P., Zmuda, E., Shih, J., Ally, A., Balasundaram, M., Carlsen, R., Chu, A., Chuah, E., Clarke, A., Dhalla, N., Holt, R. A., Jones, S. J. M., Lee, D., Ma, Y., Marra, M. A., Mayo, M., Moore, R. A., Mungall, A. J., Schein, J. E., Sipahimalani, P., Tam, A., Thiessen, N., Tse, K., Wong, T., Brooks, D., Auman, J. T., Balu, S., Bodenheimer, T., Hayes, D. N., Hoyle, A. P., Jefferys, S. R., Jones, C. D., Meng, S., Mieczkowski, P. A., Mose, L. E., Perou, C. M., Perou, A. H., Roach, J., Shi, Y., Simons, J. V., Skelly, T., Soloway, M. G., Tan, D., Veluvolu, U., Parker, J. S., Wilkerson, M. D., Korkut, A., Senbabaoglu, Y., Burch, P., McWilliams, R., Chaffee, K., Oberg, A., Zhang, W., Gingras, M. C., Wheeler, D. A., Xi, L., Albert, M., Bartlett, J., Sekhon, H., Stephen, Y., Howard, Z., Judy, M., Breggia, A., Shroff, R., Chudamani, S., Liu, J., Lolla, L., Naresh, R., Pihl, T., Sun, Q., Wan, Y., Wu, Y., Jennifer, S., Roggin, K., Becker, K. F., Behera, M., Bennett, J., Boice, L., Burks, E., Carlotti Junior, C. G., Chabot, J., Pretti da Cunha Tirapelli, D., Sebastião dos Santos, J., Dubina, M., Eschbacher, J., Huang, M., Huelsenbeck-Dill, L., Jenkins, R., Karpov, A., Kemp, R., Lyadov, V., Maithel, S., Manikhas, G., Montgomery, E., Noushmehr, H., Osunkoya, A., Owonikoko, T., Paklina, O., Potapova, O., Ramalingam, S., Rathmell, W. K., Rieger-Christ, K., Saller, C., Setdikova, G., Shabunin, A., Sica, G., Su, T., Sullivan, T., Swanson, P., Tarvin, K., Tavobilov, M., Thorne, L. B., Urbanski, S., Voronina, O., Wang, T., Crain, D., Curley, E., Gardner, J., Mallery, D., Morris, S., Paulauskis, J., Penny, R., Shelton, C., Shelton, T., Janssen, K. P., Bathe, O., Bahary, N., Slotta-Huspenina, J., Johns, A., Hibshoosh, H., Hwang, R. F., Sepulveda, A., Radenbaugh, A., Baylin, S. B., Berrios, M., Bootwalla, M. S., Holbrook, A., Lai, P. H., Maglinte, D. T., Mahurkar, S., Triche, T. J., Van Den Berg, D. J., Weisenberger, D. J., Chin, L., Kucherlapati, R., Kucherlapati, M., Pantazi, A., Park, P., Saksena, G., Voet, D., Lin, P., Frazer, S., Defreitas, T., Meier, S., Chin, L., Kwon, S. Y., Kim, Y. H., Park, S. J., Han, S. S., Kim, S. H., Kim, H., Furth, E., Tempero, M., Sander, C., Biankin, A., Chang, D., Bailey, P., Gill, A., Kench, J., Grimmond, S., Johns, A., Cancer Genome Initiative (APGI, A. P., Postier, R., Zuna, R., Sicotte, H., Demchok, J. A., Ferguson, M. L., Hutter, C. M., Mills Shaw, K. R., Sheth, M., Sofia, H. J., Tarnuzzer, R., Wang, Z., Yang, L., Zhang, J., Felau, I. & Zenklusen, J. C., Aug 14 2017, In: Cancer cell. 32, 2, p. 185-203.e13

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1172 Scopus citations