Wenyi Wang

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Wenyi Wang

Professor

 https://orcid.org/0000-0003-0617-9438
    Calculated based on number of publications stored in Pure and citations from Scopus
    20042024

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    • Next-Generation Molecular Testing of Newborn Dried Blood Spots for Cystic Fibrosis

      Lefterova, M. I., Shen, P., Odegaard, J. I., Fung, E., Chiang, T., Peng, G., Davis, R. W., Wang, W., Kharrazi, M., Schrijver, I. & Scharfe, C., Mar 1 2016, In: Journal of Molecular Diagnostics. 18, 2, p. 267-282 16 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      29 Scopus citations

    • Pan-cancer analysis of whole genomes

      The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, Feb 6 2020, In: Nature. 578, 7793, p. 82-93 12 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1547 Scopus citations

    • PancPRO: Risk assessment for individuals with a family history of pancreatic cancer

      Wang, W., Chen, S., Brune, K. A., Hruban, R. H., Parmigiani, G. & Klein, A. P., Apr 10 2007, In: Journal of Clinical Oncology. 25, 11, p. 1417-1422 6 p.

      Research output: Contribution to journal › Article › peer-review

      158 Scopus citations

    • Pathway and network analysis of more than 2500 whole cancer genomes

      PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 729.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      62 Scopus citations

    • Penetrance of different cancer types in families with Li-Fraumeni syndrome: A validation study using multicenter cohorts

      Shin, S. J., Dodd-Eaton, E. B., Peng, G., Bojadzieva, J., Chen, J., Amos, C. I., Frone, M. N., Khincha, P. P., Mai, P. L., Savage, S. A., Ballinger, M. L., Thomas, D. M., Yuan, Y., Strong, L. C. & Wang, W., Jan 15 2020, In: Cancer Research. 80, 2, p. 354-360 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      17 Scopus citations

    • Prediction of germline mutations and cancer risk in the lynch syndrome

      Chen, S., Wang, W., Lee, S., Nafa, K., Lee, J., Romans, K., Watson, P., Gruber, S. B., Euhus, D., Kinzler, K. W., Jass, J., Gallinger, S., Lindor, N. M., Casey, G., Ellis, N., Giardiello, F. M., Offit, K. & Parmigiani, G., Sep 27 2006, In: JAMA. 296, 12, p. 1479-1487 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      331 Scopus citations

    • Proteogenomic characterization of pancreatic ductal adenocarcinoma

      Clinical Proteomic Tumor Analysis Consortium, Sep 16 2021, In: Cell. 184, 19, p. 5031-5052.e26

      Research output: Contribution to journal › Article › peer-review

      Open Access
      215 Scopus citations

    • Rare variant detection using family-based sequencing analysis

      Peng, G., Fan, Y., Palculict, T. B., Shen, P., Ruteshouser, E. C., Chi, A. K., Davis, R. W., Huff, V., Scharfe, C. & Wang, W., Mar 5 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 10, p. 3985-3990 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      40 Scopus citations

    • Reactivation of the G1 enhancer landscape underlies core circuitry addiction to SWI/SNF

      Cermakova, K., Tao, L., Dejmek, M., Sala, M., Montierth, M. D., Chan, Y. S., Patel, I., Chambers, C., Cabrera, M. L., Hoffman, D., Parchem, R. J., Wang, W., Nencka, R., Barbieri, E. & Hodges, H. C., Jan 11 2024, In: Nucleic acids research. 52, 1, p. 4-21 18 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access

    • Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig

      PCAWG Evolution and Heterogeneity Working Group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 731.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      28 Scopus citations

    • Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

      MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 4748.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      25 Scopus citations

    • RNA-seq mixology: Designing realistic control experiments to compare protocols and analysis methods

      Holik, A. Z., Law, C. W., Liu, R., Wang, Z., Wang, W., Ahn, J., Asselin-Labat, M. L., Smyth, G. K. & Ritchie, M. E., Mar 17 2017, In: Nucleic acids research. 45, 5, 1063.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      24 Scopus citations

    • Sex differences in oncogenic mutational processes

      PCAWG Tumour Subtypes and Clinical Translation & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 4330.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      52 Scopus citations

    • Siah1 interacts with the scaffold protein POSH to promote JNK activation and apoptosis

      Xu, Z., Sproul, A., Wang, W., Kukekov, N. & Greene, L. A., Jan 6 2006, In: Journal of Biological Chemistry. 281, 1, p. 303-312 10 p.

      Research output: Contribution to journal › Article › peer-review

      56 Scopus citations

    • Single-cell ATAC and RNA sequencing reveal pre-existing and persistent cells associated with prostate cancer relapse

      Taavitsainen, S., Engedal, N., Cao, S., Handle, F., Erickson, A., Prekovic, S., Wetterskog, D., Tolonen, T., Vuorinen, E. M., Kiviaho, A., Nätkin, R., Häkkinen, T., Devlies, W., Henttinen, S., Kaarijärvi, R., Lahnalampi, M., Kaljunen, H., Nowakowska, K., Syvälä, H., Bläuer, M., & 13 othersCremaschi, P., Claessens, F., Visakorpi, T., Tammela, T. L. J., Murtola, T., Granberg, K. J., Lamb, A. D., Ketola, K., Mills, I. G., Attard, G., Wang, W., Nykter, M. & Urbanucci, A., Dec 1 2021, In: Nature communications. 12, 1, 5307.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      54 Scopus citations

    • Slow down to stay alive: HER4 protects against cellular stress and confers chemoresistance in neuroblastoma

      Hua, Y., Gorshkov, K., Yang, Y., Wang, W., Zhang, N. & Hughes, D. P. M., Oct 15 2012, In: Cancer. 118, 20, p. 5140-5154 15 p.

      Research output: Contribution to journal › Article › peer-review

      22 Scopus citations

    • SRMA: An r package for resequencing array data analysis

      Zhang, N., Xu, Y., O'hely, M., Speed, T. P., Scharfe, C. & Wang, W., Jul 2012, In: Bioinformatics. 28, 14, p. 1928-1930 3 p., bts286.

      Research output: Contribution to journal › Article › peer-review

      2 Scopus citations

    • Systematic assessment of tumor purity and clinical implications

      Haider, S., Tyekucheva, S., Prandi, D., Fox, N. S., Ahn, J., Xu, A. W., Pantazi, A., Park, P. J., Laird, P. W., Sander, C., Wang, W., Demichelis, F., Loda, M. & Boutros, P. C., 2020, In: JCO Precision Oncology. 4, p. 995-1005 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      22 Scopus citations

    • The cancer genome atlas pan-cancer analysis project

      Weinstein, J. N., Collisson, E. A., Mills, G. B., Shaw, K. R. M., Ozenberger, B. A., Ellrott, K., Sander, C., Stuart, J. M., Chang, K., Creighton, C. J., Davis, C., Donehower, L., Drummond, J., Wheeler, D., Ally, A., Balasundaram, M., Birol, I., Butterfield, Y. S. N., Chu, A., Chuah, E., & 316 othersChun, H. J. E., Dhalla, N., Guin, R., Hirst, M., Hirst, C., Holt, R. A., Jones, S. J. M., Lee, D., Li, H. I., Marra, M. A., Mayo, M., Moore, R. A., Mungall, A. J., Robertson, A. G., Schein, J. E., Sipahimalani, P., Tam, A., Thiessen, N., Varhol, R. J., Beroukhim, R., Bhatt, A. S., Brooks, A. N., Cherniack, A. D., Freeman, S. S., Gabriel, S. B., Helman, E., Jung, J., Meyerson, M., Ojesina, A. I., Pedamallu, C. S., Saksena, G., Schumacher, S. E., Tabak, B., Zack, T., Lander, E. S., Bristow, C. A., Hadjipanayis, A., Haseley, P., Kucherlapati, R., Lee, S., Lee, E., Luquette, L. J., Mahadeshwar, H. S., Pantazi, A., Parfenov, M., Park, P. J., Protopopov, A., Ren, X., Santoso, N., Seidman, J., Seth, S., Song, X., Tang, J., Xi, R., Xu, A. W., Yang, L., Zeng, D., Auman, J. T., Balu, S., Buda, E., Fan, C., Hoadley, K. A., Jones, C. D., Meng, S., Mieczkowski, P. A., Parker, J. S., Perou, C. M., Roach, J., Shi, Y., Silva, G. O., Tan, D., Veluvolu, U., Waring, S., Wilkerson, M. D., Wu, J., Zhao, W., Bodenheimer, T., Hayes, D. N., Hoyle, A. P., Jeffreys, S. R., Mose, L. E., Simons, J. V., Soloway, M. G., Baylin, S. B., Berman, B. P., Bootwalla, M. S., Danilova, L., Herman, J. G., Hinoue, T., Laird, P. W., Rhie, S. K., Shen, H., Triche, T., Weisenberger, D. J., Carter, S. L., Cibulskis, K., Chin, L., Zhang, J., Sougnez, C., Wang, M., Getz, G., Dinh, H., Doddapaneni, H. V., Gibbs, R., Gunaratne, P., Han, Y., Kalra, D., Kovar, C., Lewis, L., Morgan, M., Morton, D., Muzny, D., Reid, J., Xi, L., Cho, J., Dicara, D., Frazer, S., Gehlenborg, N., Heiman, D. I., Kim, J., Lawrence, M. S., Lin, P., Liu, Y., Noble, M. S., Stojanov, P., Voet, D., Zhang, H., Zou, L., Stewart, C., Bernard, B., Bressler, R., Eakin, A., Iype, L., Knijnenburg, T., Kramer, R., Kreisberg, R., Leinonen, K., Lin, J., Liu, Y., Miller, M., Reynolds, S. M., Rovira, H., Shmulevich, I., Thorsson, V., Yang, D., Zhang, W., Amin, S., Wu, C. J., Wu, C. C., Akbani, R., Aldape, K., Baggerly, K. A., Broom, B., Casasent, T. D., Cleland, J., Dodda, D., Edgerton, M., Han, L., Herbrich, S. M., Ju, Z., Kim, H., Lerner, S., Li, J., Liang, H., Liu, W., Lorenzi, P. L., Lu, Y., Melott, J., Nguyen, L., Su, X., Verhaak, R., Wang, W., Wong, A., Yang, Y., Yao, J., Yao, R., Yoshihara, K., Yuan, Y., Yung, A. K., Zhang, N., Zheng, S., Ryan, M., Kane, D. W., Aksoy, B. A., Ciriello, G., Dresdner, G., Gao, J., Gross, B., Jacobsen, A., Kahles, A., Ladanyi, M., Lee, W., Lehmann, K. V., Miller, M. L., Ramirez, R., Rätsch, G., Reva, B., Schultz, N., Senbabaoglu, Y., Shen, R., Sinha, R., Sumer, S. O., Sun, Y., Taylor, B. S., Weinhold, N., Fei, S., Spellman, P., Benz, C., Carlin, D., Cline, M., Craft, B., Goldman, M., Haussler, D., Ma, S., Ng, S., Paull, E., Radenbaugh, A., Salama, S., Sokolov, A., Swatloski, T., Uzunangelov, V., Waltman, P., Yau, C., Zhu, J., Hamilton, S. R., Abbott, S., Abbott, R., Dees, N. D., Delehaunty, K., Ding, L., Dooling, D. J., Eldred, J. M., Fronick, C. C., Fulton, R., Fulton, L. L., Kalicki-Veizer, J., Kanchi, K. L., Kandoth, C., Koboldt, D. C., Larson, D. E., Ley, T. J., Lin, L., Lu, C., Magrini, V. J., Mardis, E. R., McLellan, M. D., McMichael, J. F., Miller, C. A., O'Laughlin, M., Pohl, C., Schmidt, H., Smith, S. M., Walker, J., Wallis, J. W., Wendl, M. C., Wilson, R. K., Wylie, T., Zhang, Q., Burton, R., Jensen, M. A., Kahn, A., Pihl, T., Pot, D., Wan, Y., Levine, D. A., Black, A. D., Bowen, J., Frick, J., Gastier-Foster, J. M., Harper, H. A., Helsel, C., Leraas, K. M., Lichtenberg, T. M., McAllister, C., Ramirez, N. C., Sharpe, S., Wise, L., Zmuda, E., Chanock, S. J., Davidsen, T., Demchok, J. A., Eley, G., Felau, I., Sheth, M., Sofia, H., Staudt, L., Tarnuzzer, R., Wang, Z., Yang, L., Zhang, J., Omberg, L., Margolin, A., Raphael, B. J., Vandin, F., Wu, H. T., Leiserson, M. D. M., Benz, S. C., Vaske, C. J., Noushmehr, H., Wolf, D., Veer, L. V. T., Anastassiou, D., Yang, T. H. O., Lopez-Bigas, N., Gonzalez-Perez, A., Tamborero, D., Xia, Z., Li, W., Cho, D. Y., Przytycka, T., Hamilton, M., McGuire, S., Nelander, S., Johansson, P., Jörnsten, R. & Kling, T., Oct 1 2013, In: Nature Genetics. 45, 10, p. 1113-1120 8 p.

      Research output: Contribution to journal › Article › peer-review

      5099 Scopus citations

    • The evolutionary history of 2,658 cancers

      PCAWG Evolution & Heterogeneity Working Group & PCAWG Consortium, Feb 6 2020, In: Nature. 578, 7793, p. 122-128 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      527 Scopus citations

    • The landscape of viral associations in human cancers

      PCAWG Pathogens & PCAWG Consortium, Mar 1 2020, In: Nature Genetics. 52, 3, p. 320-330 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      219 Scopus citations

    • The Molecular Taxonomy of Primary Prostate Cancer

      Abeshouse, A., Ahn, J., Akbani, R., Ally, A., Amin, S., Andry, C. D., Annala, M., Aprikian, A., Armenia, J., Arora, A., Auman, J. T., Balasundaram, M., Balu, S., Barbieri, C. E., Bauer, T., Benz, C. C., Bergeron, A., Beroukhim, R., Berrios, M., Bivol, A., & 292 othersBodenheimer, T., Boice, L., Bootwalla, M. S., Borges Dos Reis, R., Boutros, P. C., Bowen, J., Bowlby, R., Boyd, J., Bradley, R. K., Breggia, A., Brimo, F., Bristow, C. A., Brooks, D., Broom, B. M., Bryce, A. H., Bubley, G., Burks, E., Butterfield, Y. S. N., Button, M., Canes, D., Carlotti, C. G., Carlsen, R., Carmel, M., Carroll, P. R., Carter, S. L., Cartun, R., Carver, B. S., Chan, J. M., Chang, M. T., Chen, Y., Cherniack, A. D., Chevalier, S., Chin, L., Cho, J., Chu, A., Chuah, E., Chudamani, S., Cibulskis, K., Ciriello, G., Clarke, A., Cooperberg, M. R., Corcoran, N. M., Costello, A. J., Cowan, J., Crain, D., Curley, E., David, K., Demchok, J. A., Demichelis, F., Dhalla, N., Dhir, R., Doueik, A., Drake, B., Dvinge, H., Dyakova, N., Felau, I., Ferguson, M. L., Frazer, S., Freedland, S., Fu, Y., Gabriel, S. B., Gao, J., Gardner, J., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Gerstein, M. B., Getz, G., Godwin, A. K., Gopalan, A., Graefen, M., Graim, K., Gribbin, T., Guin, R., Gupta, M., Hadjipanayis, A., Haider, S., Hamel, L., Hayes, D. N., Heiman, D. I., Hess, J., Hoadley, K. A., Holbrook, A. H., Holt, R. A., Holway, A., Hovens, C. M., Hoyle, A. P., Huang, M., Hutter, C. M., Ittmann, M., Iype, L., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Juhl, H., Kahles, A., Kane, C. J., Kasaian, K., Kerger, M., Khurana, E., Kim, J., Klein, R. J., Kucherlapati, R., Lacombe, L., Ladanyi, M., Lai, P. H., Laird, P. W., Lander, E. S., Latour, M., Lawrence, M. S., Lau, K., Lebien, T., Lee, D., Lee, S., Lehmann, K. V., Leraas, K. M., Leshchiner, I., Leung, R., Libertino, J. A., Lichtenberg, T. M., Lin, P., Linehan, W. M., Ling, S., Lippman, S. M., Liu, J., Liu, W., Lochovsky, L., Loda, M., Logothetis, C., Lolla, L., Longacre, T., Lu, Y., Luo, J., Ma, Y., Mahadeshwar, H. S., Mallery, D., Mariamidze, A., Marra, M. A., Mayo, M., McCall, S., McKercher, G., Meng, S., Mes-Masson, A. M., Merino, M. J., Meyerson, M., Mieczkowski, P. A., Mills, G. B., Shaw, K. R. M., Minner, S., Moinzadeh, A., Moore, R. A., Morris, S., Morrison, C., Mose, L. E., Mungall, A. J., Murray, B. A., Myers, J. B., Naresh, R., Nelson, J., Nelson, M. A., Nelson, P. S., Newton, Y., Noble, M. S., Noushmehr, H., Nykter, M., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Paulauskis, J., Penny, R., Perou, C. M., Piché, A., Pihl, T., Pinto, P. A., Prandi, D., Protopopov, A., Ramirez, N. C., Rao, A., Rathmell, W. K., Rätsch, G., Ren, X., Reuter, V. E., Reynolds, S. M., Rhie, S. K., Rieger-Christ, K., Roach, J., Robertson, A. G., Robinson, B., Rubin, M. A., Saad, F., Sadeghi, S., Saksena, G., Saller, C., Salner, A., Sanchez-Vega, F., Sander, C., Sandusky, G., Sauter, G., Sboner, A., Scardino, P. T., Scarlata, E., Schein, J. E., Schlomm, T., Schmidt, L. S., Schultz, N., Schumacher, S. E., Seidman, J., Neder, L., Seth, S., Sharp, A., Shelton, C., Shelton, T., Shen, H., Shen, R., Sherman, M., Sheth, M., Shi, Y., Shih, J., Shmulevich, I., Simko, J., Simon, R., Simons, J. V., Sipahimalani, P., Skelly, T., Sofia, H. J., Soloway, M. G., Song, X., Sorcini, A., Sougnez, C., Stepa, S., Stewart, C., Stewart, J., Stuart, J. M., Sullivan, T. B., Sun, C., Sun, H., Tam, A., Tan, D., Tang, J., Tarnuzzer, R., Tarvin, K., Taylor, B. S., Teebagy, P., Tenggara, I., Têtu, B., Tewari, A., Thiessen, N., Thompson, T., Thorne, L. B., Tirapelli, D. P., Tomlins, S. A., Trevisan, F. A., Troncoso, P., True, L. D., Tsourlakis, M. C., Tyekucheva, S., Van Allen, E., Van Den Berg, D. J., Veluvolu, U., Verhaak, R., Vocke, C. D., Voet, D., Wan, Y., Wang, Q., Wang, W., Wang, Z., Weinhold, N., Weinstein, J. N., Weisenberger, D. J., Wilkerson, M. D., Wise, L., Witte, J., Wu, C. C., Wu, J., Wu, Y., Xu, A. W., Yadav, S. S., Yang, L., Yang, L., Yau, C., Ye, H., Yena, P., Zeng, T., Zenklusen, J. C., Zhang, H., Zhang, J., Zhang, J., Zhang, W., Zhong, Y., Zhu, K. & Zmuda, E., Nov 5 2015, In: Cell. 163, 4, p. 1011-1025 15 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2130 Scopus citations

    • The origin of bladder cancer from mucosal field effects

      Bondaruk, J., Jaksik, R., Wang, Z., Cogdell, D., Lee, S., Chen, Y., Dinh, K. N., Majewski, T., Zhang, L., Cao, S., Tian, F., Yao, H., Kuś, P., Chen, H., Weinstein, J. N., Navai, N., Dinney, C., Gao, J., Theodorescu, D., Logothetis, C., & 6 othersGuo, C. C., Wang, W., McConkey, D., Wei, P., Kimmel, M. & Czerniak, B., Jul 15 2022, In: iScience. 25, 7, 104551.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      9 Scopus citations

    • The somatic genomic landscape of chromophobe renal cell carcinoma

      The Cancer Genome Atlas Research Network, 2014, In: Cancer cell. 26, 3, p. 319-330 12 p.

      Research output: Contribution to journal › Article › peer-review

      582 Scopus citations

    • TP53 gain-of-function mutation modulates the immunosuppressive microenvironment in non-HPV-associated oral squamous cell carcinoma

      Shi, Y., Ren, X., Cao, S., Chen, X., Yuan, B., Brasil Da Costa, F. H., Rodriguez Rosario, A. E., Corona, A., Michikawa, C., Veeramachaneni, R., Osman, A. A., Xie, T., Wang, W., Sikora, A. G., Myers, J. N. & Rangel, R., Aug 21 2023, In: Journal for immunotherapy of cancer. 11, 8, e006666.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1 Scopus citations

    • Transcriptome Deconvolution of Heterogeneous Tumor Samples with Immune Infiltration

      Wang, Z., Cao, S., Morris, J. S., Ahn, J., Liu, R., Tyekucheva, S., Gao, F., Li, B., Lu, W., Tang, X., Wistuba, I. I., Bowden, M., Mucci, L., Loda, M., Parmigiani, G., Holmes, C. C. & Wang, W., Nov 30 2018, In: iScience. 9, p. 451-460 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      47 Scopus citations

    • Unique Transcriptional Profiles Underlie Osteosarcomagenesis Driven by Different p53 Mutants

      Chachad, D., Patel, L. R., Recio, C. V., Pourebrahim, R., Whitley, E. M., Wang, W., Su, X., Xu, A., Lee, D. F. & Lozano, G., Aug 1 2023, In: Cancer Research. 83, 14, p. 27-2311 2285 p.

      Research output: Contribution to journal › Article › peer-review

      1 Scopus citations