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2023
Atypical thymoma (epithelial-rich thymoma, well-differentiated thymic carcinoma, WHO type B3 thymoma): A conundrum
Weissferdt, A. & Moran, C. A., May 2023, In: Pathology Research and Practice. 245, 154459.Research output: Contribution to journal › Review article › peer-review
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A unified mediation analysis framework for integrative cancer proteogenomics with clinical outcomes
Huang, L., Long, J. P., Irajizad, E., Doecke, J. D., Do, K. A. & Ha, M. J., Jan 1 2023, In: Bioinformatics. 39, 1, btad023.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer
Su, W., Hong, T., Feng, B., Yang, Z. & Lei, G., 2023, In: Frontiers in immunology. 14, p. 1075848 1 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
A User's Guide and Summary of Pediatric Normal Tissue Effects in the Clinic (PENTEC): Radiation Dose-Volume Response for Adverse Effects After Childhood Cancer Therapy and Future Directions
Constine, L. S., Marks, L. B., Milano, M. T., Ronckers, C. M., Jackson, A., Hudson, M. M., Marcus, K. J., Hodgson, D. C., Hua, C. H., Howell, R. M., Marples, B., Yorke, E., Olch, A. & Bentzen, S. M., Jun 1 2024, In: International Journal of Radiation Oncology Biology Physics. 119, 2, p. 321-337 17 p.Research output: Contribution to journal › Editorial › peer-review
2 Scopus citations -
Author Correction: HIC2 controls developmental hemoglobin switching by repressing BCL11A transcription (Nature Genetics, (2022), 54, 9, (1417-1426), 10.1038/s41588-022-01152-6)
Huang, P., Peslak, S. A., Ren, R., Khandros, E., Qin, K., Keller, C. A., Giardine, B., Bell, H. W., Lan, X., Sharma, M., Horton, J. R., Abdulmalik, O., Chou, S. T., Shi, J., Crossley, M., Hardison, R. C., Cheng, X. & Blobel, G. A., Sep 2023, In: Nature Genetics. 55, 9, p. 1608 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access1 Scopus citations -
Author Correction: Learning to distinguish progressive and non-progressive ductal carcinoma in situ (Nature Reviews Cancer, (2022), 22, 12, (663-678), 10.1038/s41568-022-00512-y)
Grand Challenge PRECISION Consortium, Feb 2023, In: Nature Reviews Cancer. 23, 2, p. 112 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Federated learning enables big data for rare cancer boundary detection (Nature Communications, (2022), 13, 1, (7346), 10.1038/s41467-022-33407-5)
Pati, S., Baid, U., Edwards, B., Sheller, M., Wang, S. H., Reina, G. A., Foley, P., Gruzdev, A., Karkada, D., Davatzikos, C., Sako, C., Ghodasara, S., Bilello, M., Mohan, S., Vollmuth, P., Brugnara, G., Preetha, C. J., Sahm, F., Maier-Hein, K., Zenk, M., & 259 others , Dec 2023, In: Nature communications. 14, 1, 436.Research output: Contribution to journal › Comment/debate › peer-review
Open Access1 Scopus citations -
Author Correction: DNA methylation entropy as a measure of stem cell replication and aging (Genome Biology, (2023), 24, 1, (27), 10.1186/s13059-023-02866-4)
Vaidya, H., Jeong, H. S., Keith, K., Maegawa, S., Calendo, G., Madzo, J., Jelinek, J. & Issa, J. P. J., Dec 2023, In: Genome biology. 24, 1, 104.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Modeling of intracranial tumor treating fields for the treatment of complex high-grade gliomas (Scientific Reports, (2023), 13, 1, (1636), 10.1038/s41598-023-28769-9)
Segar, D. J., Bernstock, J. D., Arnaout, O., Bi, W. L., Friedman, G. K., Langer, R., Traverso, G. & Rampersad, S. M., Dec 2023, In: Scientific reports. 13, 1, 3955.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Rewiring cancer drivers to activate apoptosis (Nature, (2023), 620, 7973, (417-425), 10.1038/s41586-023-06348-2)
Gourisankar, S., Krokhotin, A., Ji, W., Liu, X., Chang, C. Y., Kim, S. H., Li, Z., Wenderski, W., Simanauskaite, J. M., Yang, H., Vogel, H., Zhang, T., Green, M. R., Gray, N. S. & Crabtree, G. R., Sep 7 2023, In: Nature. 621, 7977, p. E27Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Genetic features and therapeutic relevance of emergent circulating tumor DNA alterations in refractory non-colorectal gastrointestinal cancers (Nature Communications, (2022), 13, 1, (7477), 10.1038/s41467-022-35144-1)
Hsiehchen, D., Bucheit, L., Yang, D., Beg, M. S., Lim, M., Lee, S. S., Kasi, P. M., Kaseb, A. O. & Zhu, H., Dec 2023, In: Nature communications. 14, 1, 7621.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Global proteomic identifies multiple cancer-related signaling pathways altered by a gut pathobiont associated with colorectal cancer (Scientific Reports, (2023), 13, 1, (14960), 10.1038/s41598-023-41951-3)
Pasquereau-Kotula, E., Nigro, G., Dingli, F., Loew, D., Poullet, P., Xu, Y., Kopetz, S., Davis, J., Peduto, L., Robbe-Masselot, C., Sansonetti, P., Trieu-Cuot, P. & Dramsi, S., Dec 2023, In: Scientific reports. 13, 1, 17676.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Regulation of hnRNPA1 by microRNAs controls the miR-18a-K-RAS axis in chemotherapy-resistant ovarian cancer (Cell Discovery, (2017), 3, 1, (17029), 10.1038/celldisc.2017.29)
Rodriguez-Aguayo, C., del C Monroig, P., Redis, R. S., Bayraktar, E., Almeida, M. I., Ivan, C., Fuentes-Mattei, E., Rashed, M. H., Chavez-Reyes, A., Ozpolat, B., Mitra, R., Sood, A. K., Calin, G. A. & Lopez-Berestein, G., Dec 2023, In: Cell Discovery. 9, 1, 111.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)
PCAWG Consortium, May 2023, In: Nature Genetics. 55, 5, p. 892 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access1 Scopus citations -
Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition (Nature Genetics, (2020), 52, 3, (306-319), 10.1038/s41588-019-0562-0)
PCAWG-Structural Variation Working Group & PCAWG Consortium, Jun 2023, In: Nature Genetics. 55, 6, p. 1080 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access1 Scopus citations -
Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes (Nature Biotechnology, (2020), 38, 3, (288-292), 10.1038/s41587-019-0360-3)
PCAWG Technical Working Group & PCAWG Consortium, Apr 2023, In: Nature biotechnology. 41, 4, p. 577 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: The landscape of viral associations in human cancers (Nature Genetics, (2020), 52, 3, (320-330), 10.1038/s41588-019-0558-9)
PCAWG Pathogens & PCAWG Consortium, Jun 2023, In: Nature Genetics. 55, 6, p. 1077 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Neoadjuvant relatlimab and nivolumab in resectable melanoma (Nature, (2022), 611, 7934, (155-160), 10.1038/s41586-022-05368-8)
Amaria, R. N., Postow, M., Burton, E. M., Tetzlaff, M. T., Ross, M. I., Torres-Cabala, C., Glitza, I. C., Duan, F., Milton, D. R., Busam, K., Simpson, L., McQuade, J. L., Wong, M. K., Gershenwald, J. E., Lee, J. E., Goepfert, R. P., Keung, E. Z., Fisher, S. B., Betof-Warner, A., Shoushtari, A. N., & 20 others , Mar 23 2023, In: Nature. 615, 7953, p. E23Research output: Contribution to journal › Comment/debate › peer-review
Open Access1 Scopus citations -
Author Correction: Pan-cancer analysis of whole genomes (Nature, (2020), 578, 7793, (82-93), 10.1038/s41586-020-1969-6)
The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E39Research output: Contribution to journal › Comment/debate › peer-review
Open Access1 Scopus citations -
Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing (Nature Genetics, (2020), 52, 3, (331-341), 10.1038/s41588-019-0576-7)
PCAWG-Structural Variation Working Group & PCAWG Consortium, Jun 2023, In: Nature Genetics. 55, 6, p. 1076 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access1 Scopus citations -
Author Correction: Patterns of somatic structural variation in human cancer genomes (Nature, (2020), 578, 7793, (112-121), 10.1038/s41586-019-1913-9)
PCAWG-Structural Variation Working Group & PCAWG Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E38Research output: Contribution to journal › Comment/debate › peer-review
Open Access2 Scopus citations -
Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)
PCAWG Consortium, Jun 2023, In: Nature Genetics. 55, 6, p. 1078 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Androgen receptor blockade promotes response to BRAF/MEK-targeted therapy (Nature, (2022), 606, 7915, (797-803), 10.1038/s41586-022-04833-8)
Vellano, C. P., White, M. G., Andrews, M. C., Chelvanambi, M., Witt, R. G., Daniele, J. R., Titus, M., McQuade, J. L., Conforti, F., Burton, E. M., Lastrapes, M. J., Ologun, G., Cogdill, A. P., Morad, G., Prieto, P., Lazar, A. J., Chu, Y., Han, G., Khan, M. A. W., Helmink, B., & 45 others , Jan 26 2023, In: Nature. 613, 7945, p. E3Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Circulating and urinary tumour DNA in urothelial carcinoma — upper tract, lower tract and metastatic disease (Nature Reviews Urology, (2023), 20, 7, (406-419), 10.1038/s41585-023-00725-2)
Rose, K. M., Huelster, H. L., Meeks, J. J., Faltas, B. M., Sonpavde, G. P., Lerner, S. P., Ross, J. S., Spiess, P. E., Grass, G. D., Jain, R. K., Kamat, A. M., Vosoughi, A., Wang, L., Wang, X. & Li, R., Jul 2023, In: Nature Reviews Urology. 20, 7, p. 452 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: The repertoire of mutational signatures in human cancer (Nature, (2020), 578, 7793, (94-101), 10.1038/s41586-020-1943-3)
PCAWG Mutational Signatures Working Group & PCAWG Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E41Research output: Contribution to journal › Comment/debate › peer-review
Open Access3 Scopus citations -
Author Correction: Genomic basis for RNA alterations in cancer (Nature, (2020), 578, 7793, (129-136), 10.1038/s41586-020-1970-0)
PCAWG Transcriptome Core Group, PCAWG Transcriptome Working Group & PCAWG Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E37Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (Nature, (2020), 578, 7793, (102-111), 10.1038/s41586-020-1965-x)
PCAWG Drivers and Functional Interpretation Working Group, PCAWG-Structural Variation Working Group & PCAWG Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E40Research output: Contribution to journal › Comment/debate › peer-review
Open Access1 Scopus citations -
Author Correction: The evolutionary history of 2,658 cancers (Nature, (2020), 578, 7793, (122-128), 10.1038/s41586-019-1907-7)
PCAWG Evolution & Heterogeneity Working Group & PCAWG Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E42Research output: Contribution to journal › Comment/debate › peer-review
Open Access1 Scopus citations -
Author Correction: Thymus alterations and susceptibility to immune checkpoint inhibitor myocarditis (Nature Medicine, (2023), 29, 12, (3100-3110), 10.1038/s41591-023-02591-2)
International ICI-Myocarditis Registry, Dec 2023, In: Nature medicine. 29, 12, p. 3268 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer (Nature Genetics, (2020), 52, 3, (294-305), 10.1038/s41588-019-0564-y)
PCAWG-Structural Variation Working Group & PCAWG Consortium, Jun 2023, In: Nature Genetics. 55, 6, p. 1079 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: A joint international consensus statement for measuring quality of survival for patients with childhood cancer (Nature Medicine, (2023), 29, 6, (1340-1348), 10.1038/s41591-023-02339-y)
the International Childhood Cancer Outcome Project participants, 2023, (Accepted/In press) In: Nature medicine.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Breast cancer plasticity is restricted by a LATS1-NCOR1 repressive axis (Nature Communications, (2022), 13, 1, (7199), 10.1038/s41467-022-34863-9)
Aylon, Y., Furth, N., Mallel, G., Friedlander, G., Nataraj, N. B., Dong, M., Hassin, O., Zoabi, R., Cohen, B., Drendel, V., Salame, T. M., Mukherjee, S., Harpaz, N., Johnson, R., Aulitzky, W. E., Yarden, Y., Shema, E. & Oren, M., Dec 2023, In: Nature communications. 14, 1, 133.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Author Correction: Prostate cancer therapy personalization via multi-modal deep learning on randomized phase III clinical trials (npj Digital Medicine, (2022), 5, 1, (71), 10.1038/s41746-022-00613-w)
NRG Prostate Cancer AI Consortium, Dec 2023, In: npj Digital Medicine. 6, 1, 27.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Authorship Trends and Disparities in Cardiothoracic Surgery
Papageorge, M. V., Luc, J. G. Y., Olive, J. K. & Antonoff, M. B., Dec 2023, In: Annals of Thoracic Surgery. 116, 6, p. 1329-1334 6 p.Research output: Contribution to journal › Article › peer-review
8 Scopus citations -
Autoimmune Pancreatitis Secondary to Immune Checkpoint Inhibitor Therapy (Type 3 AIP): Insights Into a New Disease From Serial Pancreatic Imaging
Thomas, A. S., Abreo, M., Sayed, S. A., Sireesha Yedururi, Y. W. & Chari, S. T., Jan 2023, In: Gastroenterology. 164, 1, p. 154-155 2 p.Research output: Contribution to journal › Short survey › peer-review
8 Scopus citations -
Autologous engineered T cell receptor therapy in advanced cancer
Tsimberidou, A. M., Baysal, M. A., Chakraborty, A. & Andersson, B. S., 2023, In: Human Vaccines and Immunotherapeutics. 19, 3, 2290356.Research output: Contribution to journal › Review article › peer-review
Open Access -
Autologous Stem Cell Transplantation for Patients with Multiple Myeloma with Translocation (4;14): The MD Anderson Cancer Center Experience
Pasvolsky, O., Gaballa, M. R., Milton, D. R., Masood, A., Sami, S. S., Tanner, M. R., Bashir, Q., Srour, S., Saini, N., Ramdial, J., Nieto, Y., Tang, G., Lin, P., Lee, H. C., Patel, K. K., Kebriaei, P., Thomas, S. K., Weber, D. M., Orlowski, R. Z., Shpall, E. J., & 2 others , Apr 2023, In: Transplantation and Cellular Therapy. 29, 4, p. 260.e1-260.e6Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Autologous T cell therapy for MAGE-A4+ solid cancers in HLA-A*02+ patients: a phase 1 trial
Hong, D. S., Van Tine, B. A., Biswas, S., McAlpine, C., Johnson, M. L., Olszanski, A. J., Clarke, J. M., Araujo, D., Blumenschein, G. R., Kebriaei, P., Lin, Q., Tipping, A. J., Sanderson, J. P., Wang, R., Trivedi, T., Annareddy, T., Bai, J., Rafail, S., Sun, A., Fernandes, L., & 24 others , Jan 2023, In: Nature medicine. 29, 1, p. 104-114 11 p.Research output: Contribution to journal › Article › peer-review
Open Access32 Scopus citations -
Autologous transplant and second malignancies in MM
Pasvolsky, O. & Bashir, Q., Jun 2023, In: Blood Advances. 7, 12, p. 2731-2732 2 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Automated Artificial Intelligence Model Trained on a Large Data Set Can Detect Pancreas Cancer on Diagnostic Computed Tomography Scans As Well As Visually Occult Preinvasive Cancer on Prediagnostic Computed Tomography Scans
Korfiatis, P., Suman, G., Patnam, N. G., Trivedi, K. H., Karbhari, A., Mukherjee, S., Cook, C., Klug, J. R., Patra, A., Khasawneh, H., Rajamohan, N., Fletcher, J. G., Truty, M. J., Majumder, S., Bolan, C. W., Sandrasegaran, K., Chari, S. T. & Goenka, A. H., Dec 2023, In: Gastroenterology. 165, 6, p. 1533-1546.e4Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Automated Brain Metastases Segmentation With a Deep Dive Into False-positive Detection
Ziyaee, H., Cardenas, C. E., Yeboa, D. N., Li, J., Ferguson, S. D., Johnson, J., Zhou, Z., Sanders, J., Mumme, R., Court, L., Briere, T. & Yang, J., Jan 1 2023, In: Advances in Radiation Oncology. 8, 1, 101085.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Automated Capture and Analysis of Circulating Tumor Cells in Pediatric, Adolescent and Young Adult Patients with Central Nervous System Tumors
Zaky, W., Ragoonanan, D., Batth, I., Dao, L., Wang, J., Xia, X., Daw, N. C., Gill, J. B., Khatua, S. & Li, S., Aug 2023, In: Cancers. 15, 15, 3853.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Automated Cellular-Level Dual Global Fusion of Whole-Slide Imaging for Lung Adenocarcinoma Prognosis
Diao, S., Chen, P., Showkatian, E., Bandyopadhyay, R., Rojas, F. R., Zhu, B., Hong, L., Aminu, M., Saad, M. B., Salehjahromi, M., Muneer, A., Sujit, S. J., Behrens, C., Gibbons, D. L., Heymach, J. V., Kalhor, N., Wistuba, I. I., Solis Soto, L. M., Zhang, J., Qin, W., & 1 others , Oct 2023, In: Cancers. 15, 19, 4824.Research output: Contribution to journal › Article › peer-review
Open Access -
Automated Contouring and Planning in Radiation Therapy: What Is ‘Clinically Acceptable’?
Baroudi, H., Brock, K. K., Cao, W., Chen, X., Chung, C., Court, L. E., El Basha, M. D., Farhat, M., Gay, S., Gronberg, M. P., Gupta, A. C., Hernandez, S., Huang, K., Jaffray, D. A., Lim, R., Marquez, B., Nealon, K., Netherton, T. J., Nguyen, C. M., Reber, B., & 8 others , Feb 2023, In: Diagnostics. 13, 4, 667.Research output: Contribution to journal › Review article › peer-review
Open Access16 Scopus citations -
Automated contouring and statistical process control for plan quality in a breast clinical trial
Baroudi, H., Huy Minh Nguyen, C. I., Maroongroge, S., Smith, B. D., Niedzielski, J. S., Shaitelman, S. F., Melancon, A., Shete, S., Whitaker, T. J., Mitchell, M. P., Yvonne Arzu, I., Duryea, J., Hernandez, S., El Basha, D., Mumme, R., Netherton, T., Hoffman, K. & Court, L., Oct 2023, In: Physics and Imaging in Radiation Oncology. 28, 100486.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Automated field-in-field whole brain radiotherapy planning
Huang, K., Hernandez, S., Wang, C., Nguyen, C., Briere, T. M., Cardenas, C., Court, L. & Xiao, Y., Feb 2023, In: Journal of applied clinical medical physics. 24, 2, e13819.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Automated quantification of measurable residual disease in chronic lymphocytic leukemia using an artificial intelligence-assisted workflow
Bazinet, A., Wang, A., Li, X., Jia, F., Mo, H., Wang, W. & Wang, S. A., 2023, (Accepted/In press) In: Cytometry Part B - Clinical Cytometry.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Automatic diagnosis of late-life depression by 3D convolutional neural networks and cross-sample Entropy analysis from resting-state fMRI
Lin, C., Lee, S. H., Huang, C. M., Chen, G. Y., Chang, W., Liu, H. L., Ng, S. H., Lee, T. M. C. & Wu, S. C., Feb 2023, In: Brain Imaging and Behavior. 17, 1, p. 125-135 11 p.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Automatic summarization of endoscopic skull base surgical videos through object detection and hidden Markov modeling
King, D., Adidharma, L., Peng, H., Moe, K., Li, Y., Yang, Z., Young, C., Ferreria, M., Humphreys, I., Abuzeid, W. M., Hannaford, B. & Bly, R. A., Sep 2023, In: Computerized Medical Imaging and Graphics. 108, 102248.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Automating the treatment planning process for 3D-conformal pediatric craniospinal irradiation therapy
Hernandez, S., Nguyen, C., Parkes, J., Burger, H., Rhee, D. J., Netherton, T., Mumme, R., Vega, J. G. D. L., Duryea, J., Leone, A., Paulino, A. C., Cardenas, C., Howell, R., Fuentes, D., Pollard-Larkin, J. & Court, L., Mar 2023, In: Pediatric Blood and Cancer. 70, 3, e30164.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations