Division of Basic Sciences

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  • 2023

    Identification of Key Biomarkers Associated with Ductal Breast Cancer in Spatial Transcriptomics Data

    Xi, E., Shang, L., Hu, T., Zhou, X., Yu, C. & Bai, Y., 2023, Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023. Jiang, X., Wang, H., Alhajj, R., Hu, X., Engel, F., Mahmud, M., Pisanti, N., Cui, X. & Song, H. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 3840-3847 8 p. (Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2022

    A Bayesian Response-Adaptive, Covariate-Balanced and Q-Learning-Decision-Consistent Randomization Method for SMART Designs

    Dai, T. & Shete, S., 2022, Applied Statistical Methods - ISGES 2020. Hanagal, D. D., Latpate, R. V. & Chandra, G. (eds.). Springer, p. 199-213 15 p. (Springer Proceedings in Mathematics and Statistics; vol. 380).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Evaluating the Performance of StyleGAN2-ADA on Medical Images

    Woodland, M. K., Wood, J., Anderson, B. M., Kundu, S., Lin, E., Koay, E., Odisio, B., Chung, C., Kang, H. C., Venkatesan, A. M., Yedururi, S., De, B., Lin, Y. M., Patel, A. B. & Brock, K. K., 2022, Simulation and Synthesis in Medical Imaging - 7th International Workshop, SASHIMI 2022, Held in Conjunction with MICCAI 2022, Proceedings. Zhao, C., Svoboda, D., Wolterink, J. M. & Escobar, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 142-153 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13570 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    11 Scopus citations
  • 2020

    Advanced magnetic resonance imaging based algorithm for local grading of glioma

    Gates, E. D. H., Lin, J. S., Weinberg, J. S., Prabhu, S. S., Hamilton, J., Hazle, J. D., Fuller, G. N., Baladandayuthapani, V., Fuentes, D. T. & Schellingerhout, D., 2020, Medical Imaging 2020: Computer-Aided Diagnosis. Hahn, H. K. & Mazurowski, M. A. (eds.). SPIE, 113142T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11314).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Stratified Test Alleviates Batch Effects in Single-Cell Data

    Liang, S., Liang, Q., Chen, R. & Chen, K., 2020, Algorithms for Computational Biology - 7th International Conference, AlCoB 2020, Proceedings. Martín-Vide, C., Vega-Rodríguez, M. A. & Wheeler, T. (eds.). Springer, p. 167-177 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12099 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    1 Scopus citations
  • 2019

    Automatic brain tumor segmentation with domain adaptation

    Dai, L., Li, T., Shu, H., Zhong, L., Shen, H. & Zhu, H., 2019, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. Reyes, M., Bakas, S., van Walsum, T., Crimi, A., Keyvan, F. & Kuijf, H. (eds.). Springer Verlag, p. 380-392 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11384 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    30 Scopus citations

  • Detect attributes of medical concepts via sequence labeling

    Xu, J., Li, Z., Wei, Q., Wu, Y., Xiang, Y., Lee, H. J., Zhang, Y., Wu, S. & Xu, H., Jun 2019, 2019 IEEE International Conference on Healthcare Informatics, ICHI 2019. Institute of Electrical and Electronics Engineers Inc., 8904714. (2019 IEEE International Conference on Healthcare Informatics, ICHI 2019).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access

  • Temporal mammographic registration for evaluation of architecture changes in cancer risk assessment

    Mendel, K., Li, H., Tayob, N., El-Zein, R., Bedrosian, I. & Giger, M., 2019, Medical Imaging 2019: Computer-Aided Diagnosis. Mori, K. & Hahn, H. K. (eds.). SPIE, 1095041. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10950).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations
  • 2018

    A label-fusion-aided convolutional neural network for isointense infant brain tissue segmentation

    Li, T., Zhou, F., Zhu, Z., Shu, H. & Zhu, H., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 692-695 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    7 Scopus citations

  • Bayesian classifiers of solid lesions with dynamic CT: Integrating enhancement density with washout density and delay interval

    Chen, N., Ng, C. & Hobbs, B. P., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 236-239 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • In vivo imaging of radiopaque resorbable inferior vena cava filter infused with gold nanoparticles

    Tian, L., Lee, P., Singhana, B., Chen, A., Qiao, Y., Lu, L., Martinez, J., Tasciotti, E., Jacobsen, M. C., Melancon, A., McArthur, M., Eggers, M., Huang, S. & Melancon, M. P., 2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Webster, R. J. (eds.). SPIE, 105762S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10576).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    8 Scopus citations

  • Quantitative image feature variability amongst CT scanners with a controlled scan protocol

    Ger, R. B., Zhou, S., Chi, P. C. M., Goff, D. L., Zhang, L., Lee, H. J., Fuller, C. D., Howell, R. M., Li, H., Jason Stafford, R., Court, L. E. & MacKin, D. S., Jan 1 2018, Medical Imaging 2018: Computer-Aided Diagnosis. Mori, K. & Petrick, N. (eds.). SPIE, 105751O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10575).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    5 Scopus citations

  • SlicerSALT: Shape AnaLysis Toolbox

    Vicory, J., Pascal, L., Hernandez, P., Fishbaugh, J., Prieto, J., Mostapha, M., Huang, C., Shah, H., Hong, J., Liu, Z., Michoud, L., Fillion-Robin, J. C., Gerig, G., Zhu, H., Pizer, S. M., Styner, M. & Paniagua, B., 2018, Shape in Medical Imaging - International Workshop, ShapeMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Lombaert, H., Paniagua, B., Egger, B., Lüthi, M., Reuter, M. & Wachinger, C. (eds.). Springer Verlag, p. 65-72 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11167 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    21 Scopus citations

  • Statistical disease mapping for heterogeneous neuroimaging studies

    Liu, R., Huang, C., Li, T., Yang, L. & Zhu, H., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 1415-1418 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Temporal assessment of radiomic features on clinical mammography in a high-risk population

    Mendel, K. R., Li, H., Lan, L., Chan, C. W., King, L. M., Tayob, N., Whitman, G., El-Zein, R., Bedrosian, I. & Giger, M. L., 2018, Medical Imaging 2018: Computer-Aided Diagnosis. Mori, K. & Petrick, N. (eds.). SPIE, 105753Q. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10575).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • TPCNN: Two-phase patch-based convolutional neural network for automatic brain tumor segmentation and survival prediction

    Zhou, F., Li, T., Li, H. & Zhu, H., 2018, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 3rd International Workshop, BrainLes 2017, Held in Conjunction with MICCAI 2017, Revised Selected Papers. Menze, B., Crimi, A., Kuijf, H., Reyes, M. & Bakas, S. (eds.). Springer Verlag, p. 274-286 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10670 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    9 Scopus citations
  • 2017

    Classification of adrenal lesions through spatial Bayesian modeling of GLCM

    Li, X., Guindani, M., Ng, C. S. & Hobbs, B. P., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 147-151 5 p. 7950489. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    6 Scopus citations

  • Comparing cancer information needs for consumers in the US and China

    Ji, Z., Zhang, Y., Xu, J., Chen, X., Wu, Y. & Xu, H., 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. Dongsheng, Z., Gundlapalli, A. V. & Marie-Christine, J. (eds.). IOS Press, p. 126-130 5 p. (Studies in Health Technology and Informatics; vol. 245).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    10 Scopus citations

  • Conditional local distance correlation for manifold-valued data

    Pan, W., Wang, X., Wen, C., Styner, M. & Zhu, H., 2017, Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Proceedings. Zhu, H., Niethammer, M., Styner, M., Zhu, H., Shen, D., Yap, P-T., Aylward, S. & Oguz, I. (eds.). Springer Verlag, p. 41-52 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10265 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    5 Scopus citations

  • Examination of corticothalamic fiber projections in United States service members with mild traumatic brain injury

    Rashid, F. M., Dennis, E. L., Villalon-Reina, J. E., Jin, Y., Lewis, J. D., York, G. E., Thompson, P. M. & Tate, D. F., 2017, 13th International Conference on Medical Information Processing and Analysis. Lepore, N., Brieva, J., Garcia, J. D. & Romero, E. (eds.). SPIE, 105720D. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 10572).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • HFPRM: Hierarchical functional principal regression model for diffusion tensor image bundle statistics

    Zhang, J., Huang, C., Ibrahim, J. G., Jha, S., Knickmeyer, R. C., Gilmore, J. H., Styner, M. & Zhu, H., 2017, Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Proceedings. Zhu, H., Niethammer, M., Styner, M., Zhu, H., Shen, D., Yap, P-T., Aylward, S. & Oguz, I. (eds.). Springer Verlag, p. 478-489 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10265 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    1 Scopus citations

  • Interweaving domain knowledge and unsupervised learning for psychiatric stressor extraction from clinical notes

    Zhang, O. R., Zhang, Y., Xu, J., Roberts, K., Zhang, X. Y. & Xu, H., 2017, Advances in Artificial Intelligence: From Theory to Practice - 30th International Conference on Industrial Engineering and Other Applications of Applied Intelligent Systems, IEA/AIE 2017, Proceedings. Ali, M., Benferhat, S. & Tabia, K. (eds.). Springer Verlag, p. 396-406 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10351 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    5 Scopus citations

  • Mapping age effects along fiber tracts in young adults

    Dennis, E. L., Rashid, F., Faskowitz, J., Jin, Y., McMahon, K. L., De Zubicaray, G. I., Martin, N. G., Hickie, I. B., Wright, M. J., Jahanshad, N. & Thompson, P. M., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 101-104 4 p. 7950478. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    1 Scopus citations

  • Towards practical temporal relation extraction from clinical notes: An analysis of direct temporal relations

    Lee, H. J., Zhang, Y., Xu, J., Tao, C., Xu, H. & Jiang, M., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1272-1275 4 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    5 Scopus citations
  • 2016

    Application of Deep Belief Networks for opcode based malware detection

    Ding, Y., Chen, S. & Xu, J., Oct 31 2016, 2016 International Joint Conference on Neural Networks, IJCNN 2016. Institute of Electrical and Electronics Engineers Inc., p. 3901-3908 8 p. 7727705. (Proceedings of the International Joint Conference on Neural Networks; vol. 2016-October).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    48 Scopus citations

  • Classification of prostate cancer grades and T-stages based on tissue elasticity using medical image analysis

    Yang, S., Jojic, V., Lian, J., Chen, R., Zhu, H. & Lin, M. C., 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Ourselin, S., Joskowicz, L., Sabuncu, M. R., Wells, W. & Unal, G. (eds.). Springer Verlag, p. 627-635 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Development of automated high throughput single molecular microfluidic detection platform for signal transduction analysis

    Huang, P. J., Baghbani Kordmahale, S., Chou, C. K., Yamaguchi, H., Hung, M. C. & Kameoka, J., 2016, Microfluidics, BioMEMS, and Medical Microsystems XIV. Becker, H. & Gray, B. L. (eds.). SPIE, 970511. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9705).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Functional connectivity network fusion with dynamic thresholding for MCI diagnosis

    Yang, X., Jin, Y., Chen, X., Zhang, H., Li, G. & Shen, D., 2016, Machine Learning in Medical Imaging - 7th International Workshop, MLMI 2016 held in conjunction with MICCAI 2016, Proceedings. Wang, L., Suk, H-I., Shi, Y., Adeli, E. & Wang, Q. (eds.). Springer Verlag, p. 246-253 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10019 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    11 Scopus citations

  • Functional optical coherence tomography for high-resolution mapping of cilia beat frequency in the mouse oviduct in vivo

    Wang, S., Burton, J. C., Behringer, R. R. & Larina, I. V., 2016, Photonic Therapeutics and Diagnostics XII. Mandelis, A., Choi, B., Wong, B. J. F., Ilgner, J. F., Marcu, L., Skala, M. C., Kollias, N., Zeng, H., Kang, H. W., Tearney, G. J., Gregory, K. W. & Campagnola, P. J. (eds.). SPIE, 96893R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9689).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Integrative Bayesian analysis of neuroimaging-genetic data through hierarchical dimension reduction

    Azadeh, S., Hobbs, B. P., Ma, L., Nielsen, D. A., Moeller, F. G. & Baladandayuthapani, V., Jun 15 2016, 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, p. 824-828 5 p. 7493393. (Proceedings - International Symposium on Biomedical Imaging; vol. 2016-June).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    4 Scopus citations

  • Structured sparse kernel learning for imaging genetics based alzheimer’s disease diagnosis

    Peng, J., An, L., Zhu, X., Jin, Y. & Shen, D., 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Unal, G., Ourselin, S., Joskowicz, L., Sabuncu, M. R. & Wells, W. (eds.). Springer Verlag, p. 70-78 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9901 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    34 Scopus citations

  • Three-dimensional imaging of the developing mouse female reproductive organs with optical coherence tomography

    Burton, J. C., Wang, S., Behringer, R. R. & Larina, I. V., 2016, Optical Methods in Developmental Biology IV. Choma, M. A., Fraser, S. E. & Rollins, A. M. (eds.). SPIE, 97160E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9716).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • UTHealth at SemEval-2016 task 12: An end-to-end system for temporal information extraction from clinical notes

    Lee, H. J., Zhang, Y., Xu, J., Moon, S., Wang, J., Wu, Y. & Xu, H., 2016, SemEval 2016 - 10th International Workshop on Semantic Evaluation, Proceedings. Association for Computational Linguistics (ACL), p. 1292-1297 6 p. (SemEval 2016 - 10th International Workshop on Semantic Evaluation, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    36 Scopus citations
  • 2015

    An experimental and theoretical study of the thermal decomposition of phenyldodecane in the presence of organic sulfur

    Gao, C. W., Reeves, E. P., Class, C. A., Han, K., Ono, S. & Green, W. H., Jan 1 2015, Catalysis and Reaction Engineering Division 2015 - Core Programming Area at the 2015 AIChE Annual Meeting. AIChE, p. 146-155 10 p. (Catalysis and Reaction Engineering Division 2015 - Core Programming Area at the 2015 AIChE Annual Meeting; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • An iterative algorithm for sampling from manifolds

    Rhee, C. H., Zhou, E. & Qiu, P., Jan 23 2015, Proceedings of the 2014 Winter Simulation Conference, WSC 2014. Tolk, A., Yilmaz, L., Diallo, S. Y. & Ryzhov, I. O. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 574-585 12 p. 7019922. (Proceedings - Winter Simulation Conference; vol. 2015-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations

  • Automated multi-atlas labeling of the fornix and its integrity in Alzheimer's disease

    Jin, Y., Shi, Y., Zhan, L. & Thompson, P. M., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 140-143 4 p. 7163835. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    27 Scopus citations

  • Circulating Biomarkers in Malignant Melanoma

    Alegre, E., Sammamed, M., Fernández-Landázuri, S., Zubiri, L. & González, Á., 2015, Advances in Clinical Chemistry, 2015. Makowski, G. S. & Makowski, G. S. (eds.). Academic Press Inc., p. 47-89 43 p. (Advances in Clinical Chemistry; vol. 69).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    33 Scopus citations

  • Clinical Abbreviation Disambiguation Using Neural Word Embeddings

    Wu, Y., Xu, J., Zhang, Y. & Xu, H., 2015, ACL-IJCNLP 2015 - BioNLP 2015: Workshop on Biomedical Natural Language Processing, Proceedings of the Workshop. Association for Computational Linguistics (ACL), p. 171-176 6 p. (ACL-IJCNLP 2015 - BioNLP 2015: Workshop on Biomedical Natural Language Processing, Proceedings of the Workshop).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    66 Scopus citations

  • CSA-RRBS: A comprehensive streamlined analysis of reduced representation bisulfite sequencing (RRBS) data

    Gong, T., Gaddis, S. S., Lu, Y., Kondo, K., Zhao, H., Shen, J., Marcelo Aldaz, C. & Estecio, M. R., 2015, Proceedings of the 7th International Conference on Bioinformatics and Computational Biology, BICOB 2015. Haspel, N. & Saeed, F. (eds.). The International Society for Computers and Their Applications (ISCA), p. 105-110 6 p. (Proceedings of the 7th International Conference on Bioinformatics and Computational Biology, BICOB 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • DFDL: Discriminative feature-oriented dictionary learning for histopathological image classification

    Vu, T. H., Mousavi, H. S., Monga, V., Rao, U. K. A. & Rao, G., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 990-994 5 p. 7164037. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    36 Scopus citations

  • Identification of infants at risk for autism using multi-parameter hierarchical white matter connectomes

    Infant Brain Imaging Study (IBIS) Network, 2015, Machine Learning in Medical Imaging - 6th International Workshop, MLMI 2015 Held in Conjunction with MICCAI 2015, Proceedings. Zhou, L., Shi, Y., Wang, L. & Wang, Q. (eds.). Springer Verlag, p. 170-177 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9352).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    10 Scopus citations

  • Identification of significant genetic variants via SLOPE, and its extension to Group SLOPE

    Gossmann, A., Cao, S. & Wang, Y. P., Sep 9 2015, BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 232-240 9 p. (BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Optimized prediction of extreme treatment outcomes in ovarian cancer

    Misganaw, B., Ahsen, E., Singh, N., Baggerly, K. A., Unruh, A., White, M. A. & Vidyasagar, M., Feb 8 2015, 54rd IEEE Conference on Decision and Control,CDC 2015. Institute of Electrical and Electronics Engineers Inc., p. 1254-1258 5 p. 7402383. (Proceedings of the IEEE Conference on Decision and Control; vol. 54rd IEEE Conference on Decision and Control,CDC 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Raman spectroscopy complements optical coherent tomography in tissue classification and cancer detection

    Qi, J., Sudheendran, N., Liu, C. H., Santos, G. M., Young, E. D., Lazar, A. J., Lev, D. C., Pollock, R. E., Larin, K. V. & Shih, W. C., 2015, Optical Biopsy XIII: Toward Real-Time Spectroscopic Imaging and Diagnosis. Alfano, R. R. & Demos, S. G. (eds.). SPIE, 931807. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9318).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Soft-split sparse regression based random forest for predicting future clinical scores of Alzheimer’s disease

    Huang, L., Gao, Y., Jin, Y., Thung, K. H. & Shen, D., 2015, Machine Learning in Medical Imaging - 6th International Workshop, MLMI 2015 Held in Conjunction with MICCAI 2015, Proceedings. Zhou, L., Shi, Y., Wang, L. & Wang, Q. (eds.). Springer Verlag, p. 246-254 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9352).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    9 Scopus citations

  • The effective diagnosis of schizophrenia by using multi-layer RBMs deep networks

    Qiao, C., Lin, D. D., Cao, S. L. & Wang, Y. P., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 603-606 4 p. 7359751. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    5 Scopus citations

  • Tractography-embedded white matter stream clustering

    Jin, Y. & Cetingul, H. E., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 432-435 4 p. 7163904. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Unified tests for fine scale mapping and identifying sparse high-dimensional sequence associations

    Cao, S., Qin, H., Gossmann, A., Deng, H. W. & Wang, Y. P., Sep 9 2015, BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 241-249 9 p. (BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • UTH-CCB: The Participation of the SemEval 2015 Challenge - Task 14

    Xu, J., Zhang, Y., Wang, J., Wu, Y., Jiang, M., Soysal, E. & Xu, H., 2015, SemEval 2015 - 9th International Workshop on Semantic Evaluation, co-located with the 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, NAACL-HLT 2015 - Proceedings. Nakov, P., Zesch, T., Cer, D. & Jurgens, D. (eds.). Association for Computational Linguistics (ACL), p. 311-314 4 p. (SemEval 2015 - 9th International Workshop on Semantic Evaluation, co-located with the 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, NAACL-HLT 2015 - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    11 Scopus citations

  • White matter integrity in traumatic brain injury: Effects of permissible fiber turning angle

    Dennis, E. L., Jin, Y., Kernan, C., Babikian, T., Mink, R., Babbitt, C., Johnson, J., Giza, C. C., Asarnow, R. F. & Thompson, P. M., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 930-933 4 p. 7164023. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    8 Scopus citations