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Christopher Bristow

Institute Group Leader

    Calculated based on number of publications stored in Pure and citations from Scopus
    20052023

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    • 2005

      Systems-level questions in Drosophila oogenesis

      Yakoby, N., Bristow, C. A., Gouzman, I., Rossi, M. P., Gogotsi, Y., Schüpbach, T. & Shvartsman, S. Y., Dec 2005, In: IEE Proceedings Systems Biology. 152, 4, p. 276-284 9 p.

      Research output: Contribution to journal › Article › peer-review

      11 Scopus citations
    • 2008

      A Combinatorial Code for Pattern Formation in Drosophila Oogenesis

      Yakoby, N., Bristow, C. A., Gong, D., Schafer, X., Lembong, J., Zartman, J. J., Halfon, M. S., Schüpbach, T. & Shvartsman, S. Y., Nov 11 2008, In: Developmental cell. 15, 5, p. 725-737 13 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      57 Scopus citations

    • Cad74A is regulated by BR and is required for robust dorsal appendage formation in Drosophila oogenesis

      Zartman, J. J., Yakoby, N., Bristow, C. A., Zhou, X., Schlichting, K., Dahmann, C. & Shvartsman, S. Y., Oct 15 2008, In: Developmental Biology. 322, 2, p. 289-301 13 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      16 Scopus citations
    • 2010

      Electrochemical sensing of thiocyanate using gold electrodes modified with an underpotentially deposited silver monolayer

      Bristow, C. A., Michalitsch, R. & Laibinis, P. E., Jan 2010, In: Electroanalysis. 22, 2, p. 143-146 4 p.

      Research output: Contribution to journal › Article › peer-review

      4 Scopus citations

    • Identification of functional elements and regulatory circuits by Drosophila modENCODE

      Roy, S., Ernst, J., Kharchenko, P. V., Kheradpour, P., Negre, N., Eaton, M. L., Landolin, J. M., Bristow, C. A., Ma, L., Lin, M. F., Washietl, S., Arshinoff, B. I., Ay, F., Meyer, P. E., Robine, N., Washington, N. L., Di Stefano, L., Berezikov, E., Brown, C. D., Candeias, R., & 166 othersCarlson, J. W., Carr, A., Jungreis, I., Marbach, D., Sealfon, R., Tolstorukov, M. Y., Will, S., Alekseyenko, A. A., Artieri, C., Booth, B. W., Brooks, A. N., Dai, Q., Davis, C. A., Duff, M. O., Feng, X., Gorchakov, A. A., Gu, T., Henikoff, J. G., Kapranov, P., Li, R., MacAlpine, H. K., Malone, J., Minoda, A., Nordman, J., Okamura, K., Perry, M., Powell, S. K., Riddle, N. C., Sakai, A., Samsonova, A., Sandler, J. E., Schwartz, Y. B., Sher, N., Spokony, R., Sturgill, D., van Baren, M., Wan, K. H., Yang, L., Yu, C., Feingold, E., Good, P., Guyer, M., Lowdon, R., Ahmad, K., Andrews, J., Berger, B., Brenner, S. E., Brent, M. R., Cherbas, L., Elgin, S. C. R., Gingeras, T. R., Grossman, R., Hoskins, R. A., Kaufman, T. C., Kent, W., Kuroda, M. I., Orr-Weaver, T., Perrimon, N., Pirrotta, V., Posakony, J. W., Ren, B., Russell, S., Cherbas, P., Graveley, B. R., Lewis, S., Micklem, G., Oliver, B., Park, P. J., Celniker, S. E., Henikoff, S., Karpen, G. H., Lai, E. C., MacAlpine, D. M., Stein, L. D., White, K. P., Kellis, M., Booth, B., Comstock, C. L. G., Dobin, A., Drenkow, J., Dudoit, S., Dumais, J., Fagegaltier, D., Ghosh, S., Hansen, K. D., Jha, S., Langton, L., Lin, W., Miller, D., Tenney, A. E., Wang, H., Willingham, A. T., Zaleski, C., Zhang, D., Acevedo, D., Bishop, E. P., Gadel, S. E., Jung, Y. L., Kennedy, C. D., Lee, O. K., Linder-Basso, D., Marchetti, S. E., Shanower, G., Nègre, N., Grossman, R. L., Auburn, R., Bellen, H. J., Chen, J., Domanus, M. H., Hanley, D., Heinz, E., Li, Z., Meyer, F., Miller, S. W., Morrison, C. A., Scheftner, D. A., Senderowicz, L., Shah, P. K., Suchy, S., Tian, F., Venken, K. J. T., White, R., Wilkening, J., Zieba, J., Nordman, J. T., Orr-Weaver, T. L., DeNapoli, L. C., Ding, Q., Eng, T., Kashevsky, H., Li, S., Prinz, J. A., Hannon, G. J., Hirst, M., Marra, M., Rooks, M., Zhao, Y., Bryson, T. D., Perry, M. D., Kent, W. J., Lewis, S. E., Barber, G., Chateigner, A., Clawson, H., Contrino, S., Guillier, F., Hinrichs, A. S., Kephart, E. T., Lloyd, P., Lyne, R., McKay, S., Moore, R. A., Mungall, C., Rutherford, K. M., Ruzanov, P., Smith, R., Stinson, E. O., Zha, Z., Artieri, C. G., Malone, J. H., Jiang, L., Mattiuzzo, N., Feingold, E. A., Good, P. J., Guyer, M. S. & Lowdon, R. F., Dec 24 2010, In: Science. 330, 6012, p. 1787-1797 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      956 Scopus citations
    • 2011

      A cis-regulatory map of the Drosophila genome

      Négre, N., Brown, C. D., Ma, L., Bristow, C. A., Miller, S. W., Wagner, U., Kheradpour, P., Eaton, M. L., Loriaux, P., Sealfon, R., Li, Z., Ishii, H., Spokony, R. F., Chen, J., Hwang, L., Cheng, C., Auburn, R. P., Davis, M. B., Domanus, M., Shah, P. K., & 20 othersMorrison, C. A., Zieba, J., Suchy, S., Senderowicz, L., Victorsen, A., Bild, N. A., Grundstad, A. J., Hanley, D., MacAlpine, D. M., Mannervik, M., Venken, K., Bellen, H., White, R., Gerstein, M., Russell, S., Grossman, R. L., Ren, B., Posakony, J. W., Kellis, M. & White, K. P., Mar 24 2011, In: Nature. 471, 7339, p. 527-531 5 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      398 Scopus citations
    • 2012

      Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks

      Marbach, D., Roy, S., Ay, F., Meyer, P. E., Candeias, R., Kahveci, T., Bristow, C. A. & Kellis, M., Jul 2012, In: Genome research. 22, 7, p. 1334-1349 16 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      90 Scopus citations
    • 2013

      Spatial expression of transcription factors in Drosophila embryonic organ development

      Hammonds, A. S., Bristow, C. A., Fisher, W. W., Weiszmann, R., Wu, S., Hartenstein, V., Kellis, M., Yu, B., Frise, E. & Celniker, S. E., Dec 20 2013, In: Genome biology. 14, 12, R140.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      97 Scopus citations

    • The cancer genome atlas pan-cancer analysis project

      Weinstein, J. N., Collisson, E. A., Mills, G. B., Shaw, K. R. M., Ozenberger, B. A., Ellrott, K., Sander, C., Stuart, J. M., Chang, K., Creighton, C. J., Davis, C., Donehower, L., Drummond, J., Wheeler, D., Ally, A., Balasundaram, M., Birol, I., Butterfield, Y. S. N., Chu, A., Chuah, E., & 316 othersChun, H. J. E., Dhalla, N., Guin, R., Hirst, M., Hirst, C., Holt, R. A., Jones, S. J. M., Lee, D., Li, H. I., Marra, M. A., Mayo, M., Moore, R. A., Mungall, A. J., Robertson, A. G., Schein, J. E., Sipahimalani, P., Tam, A., Thiessen, N., Varhol, R. J., Beroukhim, R., Bhatt, A. S., Brooks, A. N., Cherniack, A. D., Freeman, S. S., Gabriel, S. B., Helman, E., Jung, J., Meyerson, M., Ojesina, A. I., Pedamallu, C. S., Saksena, G., Schumacher, S. E., Tabak, B., Zack, T., Lander, E. S., Bristow, C. A., Hadjipanayis, A., Haseley, P., Kucherlapati, R., Lee, S., Lee, E., Luquette, L. J., Mahadeshwar, H. S., Pantazi, A., Parfenov, M., Park, P. J., Protopopov, A., Ren, X., Santoso, N., Seidman, J., Seth, S., Song, X., Tang, J., Xi, R., Xu, A. W., Yang, L., Zeng, D., Auman, J. T., Balu, S., Buda, E., Fan, C., Hoadley, K. A., Jones, C. D., Meng, S., Mieczkowski, P. A., Parker, J. S., Perou, C. M., Roach, J., Shi, Y., Silva, G. O., Tan, D., Veluvolu, U., Waring, S., Wilkerson, M. D., Wu, J., Zhao, W., Bodenheimer, T., Hayes, D. N., Hoyle, A. P., Jeffreys, S. R., Mose, L. E., Simons, J. V., Soloway, M. G., Baylin, S. B., Berman, B. P., Bootwalla, M. S., Danilova, L., Herman, J. G., Hinoue, T., Laird, P. W., Rhie, S. K., Shen, H., Triche, T., Weisenberger, D. J., Carter, S. L., Cibulskis, K., Chin, L., Zhang, J., Sougnez, C., Wang, M., Getz, G., Dinh, H., Doddapaneni, H. V., Gibbs, R., Gunaratne, P., Han, Y., Kalra, D., Kovar, C., Lewis, L., Morgan, M., Morton, D., Muzny, D., Reid, J., Xi, L., Cho, J., Dicara, D., Frazer, S., Gehlenborg, N., Heiman, D. I., Kim, J., Lawrence, M. S., Lin, P., Liu, Y., Noble, M. S., Stojanov, P., Voet, D., Zhang, H., Zou, L., Stewart, C., Bernard, B., Bressler, R., Eakin, A., Iype, L., Knijnenburg, T., Kramer, R., Kreisberg, R., Leinonen, K., Lin, J., Liu, Y., Miller, M., Reynolds, S. M., Rovira, H., Shmulevich, I., Thorsson, V., Yang, D., Zhang, W., Amin, S., Wu, C. J., Wu, C. C., Akbani, R., Aldape, K., Baggerly, K. A., Broom, B., Casasent, T. D., Cleland, J., Dodda, D., Edgerton, M., Han, L., Herbrich, S. M., Ju, Z., Kim, H., Lerner, S., Li, J., Liang, H., Liu, W., Lorenzi, P. L., Lu, Y., Melott, J., Nguyen, L., Su, X., Verhaak, R., Wang, W., Wong, A., Yang, Y., Yao, J., Yao, R., Yoshihara, K., Yuan, Y., Yung, A. K., Zhang, N., Zheng, S., Ryan, M., Kane, D. W., Aksoy, B. A., Ciriello, G., Dresdner, G., Gao, J., Gross, B., Jacobsen, A., Kahles, A., Ladanyi, M., Lee, W., Lehmann, K. V., Miller, M. L., Ramirez, R., Rätsch, G., Reva, B., Schultz, N., Senbabaoglu, Y., Shen, R., Sinha, R., Sumer, S. O., Sun, Y., Taylor, B. S., Weinhold, N., Fei, S., Spellman, P., Benz, C., Carlin, D., Cline, M., Craft, B., Goldman, M., Haussler, D., Ma, S., Ng, S., Paull, E., Radenbaugh, A., Salama, S., Sokolov, A., Swatloski, T., Uzunangelov, V., Waltman, P., Yau, C., Zhu, J., Hamilton, S. R., Abbott, S., Abbott, R., Dees, N. D., Delehaunty, K., Ding, L., Dooling, D. J., Eldred, J. M., Fronick, C. C., Fulton, R., Fulton, L. L., Kalicki-Veizer, J., Kanchi, K. L., Kandoth, C., Koboldt, D. C., Larson, D. E., Ley, T. J., Lin, L., Lu, C., Magrini, V. J., Mardis, E. R., McLellan, M. D., McMichael, J. F., Miller, C. A., O'Laughlin, M., Pohl, C., Schmidt, H., Smith, S. M., Walker, J., Wallis, J. W., Wendl, M. C., Wilson, R. K., Wylie, T., Zhang, Q., Burton, R., Jensen, M. A., Kahn, A., Pihl, T., Pot, D., Wan, Y., Levine, D. A., Black, A. D., Bowen, J., Frick, J., Gastier-Foster, J. M., Harper, H. A., Helsel, C., Leraas, K. M., Lichtenberg, T. M., McAllister, C., Ramirez, N. C., Sharpe, S., Wise, L., Zmuda, E., Chanock, S. J., Davidsen, T., Demchok, J. A., Eley, G., Felau, I., Sheth, M., Sofia, H., Staudt, L., Tarnuzzer, R., Wang, Z., Yang, L., Zhang, J., Omberg, L., Margolin, A., Raphael, B. J., Vandin, F., Wu, H. T., Leiserson, M. D. M., Benz, S. C., Vaske, C. J., Noushmehr, H., Wolf, D., Veer, L. V. T., Anastassiou, D., Yang, T. H. O., Lopez-Bigas, N., Gonzalez-Perez, A., Tamborero, D., Xia, Z., Li, W., Cho, D. Y., Przytycka, T., Hamilton, M., McGuire, S., Nelander, S., Johansson, P., Jörnsten, R. & Kling, T., Oct 1 2013, In: Nature Genetics. 45, 10, p. 1113-1120 8 p.

      Research output: Contribution to journal › Article › peer-review

      5099 Scopus citations
    • 2014

      Characterization of HPV and host genome interactions in primary head and neck cancers

      The Cancer Genome Atlas Network, Oct 28 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 43, p. 15544-15549 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      280 Scopus citations

    • Comprehensive molecular characterization of gastric adenocarcinoma

      Cancer Genome Atlas Research Network, Sep 11 2014, In: Nature. 513, 7517, p. 202-209 8 p.

      Research output: Contribution to journal › Article › peer-review

      4565 Scopus citations

    • Comprehensive molecular characterization of urothelial bladder carcinoma

      Weinstein, J. N., Akbani, R., Broom, B. M., Wang, W., Verhaak, R. G. W., McConkey, D., Lerner, S., Morgan, M., Creighton, C. J., Smith, C., Cherniack, A. D., Kim, J., Pedamallu, C. S., Noble, M. S., Al-Ahmadie, H. A., Reuter, V. E., Rosenberg, J. E., F.Bajorin, D., Bochner, B. H., Solit, D. B., & 273 othersKoppie, T., Robinson, B., Gordenin, D. A., Fargo, D., Klimczak, L. J., Roberts, S. A., Au, J., Laird, P. W., Hinoue, T., Schultz, N., Ramirez, R., Hansel, D., Hoadley, K. A., Kim, W. Y., Damrauer, J. S., Baylin, S. B., Mungall, A. J., Robertson, A. G., Chu, A., Kwiatkowski, D. J., Sougnez, C., Cibulskis, K., Lichtenstein, L., Sivachenko, A., Stewart, C., Lawrence, M. S., Getz, G., Lander, E., Gabrie, S. B., Donehower, L., Carter, S. L., Saksena, G., Schumacher, S. E., Freeman, S. S., Jung, J., Bhatt, A. S., Pugh, T., Beroukhim, R., Meyerson, M., Ally, A., Balasundaram, M., Butterfield, Y. S. N., Dhalla, N., Hirst, C., Holt, R. A., Jones, S. J. M., Lee, D., Li, H. I., Marra, M. A., Mayo, M., Moore, R. A., Schein, J. E., Sipahimalani, P., Tam, A., Thiessen, N., Wong, T., Wye, N., Bowlby, R., Chuah, E., Guin, R., Shen, H., Bootwalla, M. S., Triche, T., Lai, P. H., Van Den Berg, D. J., Weisenberger, D. J., Balu, S., Bodenheimer, T., Hoyle, A. P., Jefferys, S. R., Meng, S., Mose, L. E., Simons, J. V., Soloway, M. G., Wu, J., Parker, J. S., Hayes, D. N., Roach, J., Buda, E., Jones, C. D., Mieczkowski, P. A., Tan, D., Veluvolu, U., Waring, S., Auman, J. T., Perou, C. M., Wilkerson, M. D., Santoso, N., Parfenov, M., Ren, X., Pantazi, A., Hadjipanayis, A., Seidman, J., Kucherlapati, R., Lee, S., Yang, L., Park, P. J., Xu, A. W., Protopopov, A., Zhang, J., Bristow, C., Mahadeshwar, H. S., Seth, S., Song, X., Tang, J., Zeng, D., Chin, L., Guo, C., Casasent, T. D., Liu, W., Ju, Z., Motter, T., Peng, B., Ryan, M., Su, X., Yang, J. Y., Lorenzi, P. L., Yao, H., Zhang, N., Zhang, J., Mills, G. B., Cho, J., DiCara, D., Frazer, S., Gehlenborg, N., Heiman, D. I., Lin, P., Liu, Y., Stojanov, P., Voet, D., Zhang, H., Zou, L., Bernard, B., Kreisberg, D., Reynolds, S., Rovira, H., Shmulevich, I., Gao, J., Jacobsen, A., Aksoy, B. A., Antipin, Y., Ciriello, G., Dresdner, G., Gross, B., Lee, W., Reva, B., Shen, R., Sinha, R., Sumer, S. O., Weinhold, N., Ladanyi, M., Sander, C., Benz, C., Carlin, D., Haussler, D., Ng, S., Paull, E., Stuart, J., Zhu, J., Liu, Y., Zhang, W., Taylor, B. S., Lichtenberg, T. M., Zmuda, E., Barr, T., Black, A. D., George, M., Hanf, B., Helsel, C., McAllister, C., Ramirez, N. C., Tabler, T. R., Weaver, S., Wise, L., Bowen, J., Gastier-Foster, J. M., Jian, W., Tello, S., Ittman, M., Castro, P., McClenden, W. D., Gibbs, R., Saller, C., Tarvin, K., DiPiero, J. M., Owens, J., Bollag, R., Li, Q., Weinberger, P., Czerwinski, C., Huelsenbeck-Dill, L., Iacocca, M., Petrelli, N., Rabeno, B., Swanson, P., Shelton, T., Curley, E., Gardner, J., Mallery, D., Penny, R., Van Bang, N., Hanh, P. T., Kohl, B., Van Le, X., Phu, B. D., Thorp, R., Tien, N. V., Vinh, L. Q., Sandusky, G., Burks, E., Christ, K., Gee, J., Holway, A., Moinzadeh, A., Sorcini, A., Sullivan, T., Garcia-Grossman, I. R., Regazzi, A. M., Boice, L., Rathmell, W. K., Thorne, L., Bastacky, S., Davies, B., Dhir, R., Gingrich, J., Hrebinko, R., Maranchie, J., Nelson, J., Parwani, A., Bshara, W., Gaudioso, C., Morrison, C., Alexopoulou, V., Bartlett, J., Engel, J., Kodeeswaran, S., Antic, T., O'Donnell, P. H., Smith, N. D., Steinberg, G. D., Egea, S., Gomez-Fernandez, C., Herbert, L., Jorda, M., Soloway, M., Beaver, A., Carter, S., Kapur, P., Lewis, C., Lotan, Y., Bondaruk, J., Czerniak, B., Skinner, E., Aldape, K., Jensen, M. A., Kahn, A. B., Pihl, T. D., Pot, D. A., Srinivasan, D., Wan, Y., Ferguson, M. L., Zenklusen, J. C., Davidsen, T., Demchok, J. A., Shaw, K. R. M., Sheth, M., Tarnuzzer, R., Wang, Z., Yang, L., Hutter, C., Ozenberger, B. A., Sofia, H. J. & Eley, G., 2014, In: Nature. 507, 7492, p. 315-322 8 p.

      Research output: Contribution to journal › Article › peer-review

      2314 Scopus citations

    • Integrated Genomic Characterization of Papillary Thyroid Carcinoma

      Agrawal, N., Akbani, R., Aksoy, B. A., Ally, A., Arachchi, H., Asa, S. L., Auman, J. T., Balasundaram, M., Balu, S., Baylin, S. B., Behera, M., Bernard, B., Beroukhim, R., Bishop, J. A., Black, A. D., Bodenheimer, T., Boice, L., Bootwalla, M. S., Bowen, J., Bowlby, R., & 223 othersBristow, C. A., Brookens, R., Brooks, D., Bryant, R., Buda, E., Butterfield, Y. S. N., Carling, T., Carlsen, R., Carter, S. L., Carty, S. E., Chan, T. A., Chen, A. Y., Cherniack, A. D., Cheung, D., Chin, L., Cho, J., Chu, A., Chuah, E., Cibulskis, K., Ciriello, G., Clarke, A., Clayman, G. L., Cope, L., Copland, J. A., Covington, K., Danilova, L., Davidsen, T., Demchok, J. A., DiCara, D., Dhalla, N., Dhir, R., Dookran, S. S., Dresdner, G., Eldridge, J., Eley, G., El-Naggar, A. K., Eng, S., Fagin, J. A., Fennell, T., Ferris, R. L., Fisher, S., Frazer, S., Frick, J., Gabriel, S. B., Ganly, I., Gao, J., Garraway, L. A., Gastier-Foster, J. M., Getz, G., Gehlenborg, N., Ghossein, R., Gibbs, R. A., Giordano, T. J., Gomez-Hernandez, K., Grimsby, J., Gross, B., Guin, R., Hadjipanayis, A., Harper, H. A., Hayes, D. N., Heiman, D. I., Herman, J. G., Hoadley, K. A., Hofree, M., Holt, R. A., Hoyle, A. P., Huang, F. W., Huang, M., Hutter, C. M., Ideker, T., Iype, L., Jacobsen, A., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Kasaian, K., Kebebew, E., Khuri, F. R., Kim, J., Kramer, R., Kreisberg, R., Kucherlapati, R., Kwiatkowski, D. J., Ladanyi, M., Lai, P. H., Laird, P. W., Lander, E., Lawrence, M. S., Lee, D., Lee, E., Lee, S., Lee, W., Leraas, K. M., Lichtenberg, T. M., Lichtenstein, L., Lin, P., Ling, S., Liu, J., Liu, W., Liu, Y., LiVolsi, V. A., Lu, Y., Ma, Y., Mahadeshwar, H. S., Marra, M. A., Mayo, M., McFadden, D. G., Meng, S., Meyerson, M., Mieczkowski, P. A., Miller, M., Mills, G., Moore, R. A., Mose, L. E., Mungall, A. J., Murray, B. A., Nikiforov, Y. E., Noble, M. S., Ojesina, A. I., Owonikoko, T. K., Ozenberger, B. A., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Paull, E. O., Pedamallu, C. S., Perou, C. M., Prins, J. F., Protopopov, A., Ramalingam, S. S., Ramirez, N. C., Ramirez, R., Raphael, B. J., Rathmell, W. K., Ren, X., Reynolds, S. M., Rheinbay, E., Ringel, M. D., Rivera, M., Roach, J., Robertson, A. G., Rosenberg, M. W., Rosenthal, M., Sadeghi, S., Saksena, G., Sander, C., Santoso, N., Schein, J. E., Schultz, N., Schumacher, S. E., Seethala, R. R., Seidman, J., Senbabaoglu, Y., Seth, S., Sharpe, S., Shaw, K. R. M., Shen, J. P., Shen, R., Sherman, S., Sheth, M., Shi, Y., Shmulevich, I., Sica, G. L., Simons, J. V., Sinha, R., Sipahimalani, P., Smallridge, R. C., Sofia, H. J., Soloway, M. G., Song, X., Sougnez, C., Stewart, C., Stojanov, P., Stuart, J. M., Sumer, S. O., Sun, Y., Tabak, B., Tam, A., Tan, D., Tang, J., Tarnuzzer, R., Taylor, B. S., Thiessen, N., Thorne, L., Thorsson, V., Tuttle, R. M., Umbricht, C. B., Van Den Berg, D. J., Vandin, F., Veluvolu, U., Verhaak, R. G. W., Vinco, M., Voet, D., Walter, V., Wang, Z., Waring, S., Weinberger, P. M., Weinhold, N., Weinstein, J. N., Weisenberger, D. J., Wheeler, D., Wilkerson, M. D., Wilson, J., Williams, M., Winer, D. A., Wise, L., Wu, J., Xi, L., Xu, A. W., Yang, L., Yang, L., Zack, T. I., Zeiger, M. A., Zeng, D., Zenklusen, J. C., Zhao, N., Zhang, H., Zhang, J., Zhang, J., Zhang, W., Zmuda, E. & Zou, L., Oct 23 2014, In: Cell. 159, 3, p. 676-690 15 p.

      Research output: Contribution to journal › Article › peer-review

      2157 Scopus citations

    • Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin

      The Cancer Genome Atlas Research Network, Aug 14 2014, In: Cell. 158, 4, p. 929-944 16 p.

      Research output: Contribution to journal › Article › peer-review

      1093 Scopus citations

    • The somatic genomic landscape of chromophobe renal cell carcinoma

      The Cancer Genome Atlas Research Network, 2014, In: Cancer cell. 26, 3, p. 319-330 12 p.

      Research output: Contribution to journal › Article › peer-review

      582 Scopus citations
    • 2015

      Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas

      Brat, D. J., Verhaak, R., Aldape, K. D., Yung, W. K. A., Salama, S. R., Cooper, L. A. D., Rheinbay, E., Miller, C. R., Vitucci, M., Morozova, O., Robertson, A. G., Noushmehr, H., Laird, P. W., Cherniack, A. D., Akbani, R., Huse, J. T., Ciriello, G., Poisson, L. M., Barnholtz-Sloan, J. S., Berger, M. S., & 287 othersBrennan, C., Colen, R., Colman, H., Flanders, A. E., Giannini, C., Grifford, M., Iavarone, A., Jain, R., Joseph, I., Kim, J., Kasaian, K., Mikkelsen, T., Murray, B. A., O'Neill, B. P., Pachter, L., Parsons, D. W., Sougnez, C., Sulman, E. P., Vandenberg, S. R., Van Meir, E. G., Von Deimling, A., Zhang, H., Crain, D., Lau, K., Mallery, D., Morris, S., Paulauskis, J., Penny, R., Shelton, T., Sherman, M., Yena, P., Black, A., Bowen, J., Dicostanzo, K., Gastier-Foster, J., Leraas, K. M., Lichtenberg, T. M., Pierson, C. R., Ramirez, N. C., Taylor, C., Weaver, S., Wise, L., Zmuda, E., Davidsen, T., Demchok, J. A., Eley, G., Ferguson, M. L., Hutter, C. M., Shaw, K. R. M., Ozenberger, B. A., Sheth, M., Sofia, H. J., Tarnuzzer, R., Wang, Z., Yang, L., Zenklusen, J. C., Ayala, B., Baboud, J., Chudamani, S., Jensen, M. A., Liu, J., Pihl, T., Raman, R., Wan, Y., Wu, Y., Ally, A., Auman, J. T., Balasundaram, M., Balu, S., Baylin, S. B., Beroukhim, R., Bootwalla, M. S., Bowlby, R., Bristow, C. A., Brooks, D., Butterfield, Y., Carlsen, R., Carter, S., Chin, L., Chu, A., Chuah, E., Cibulskis, K., Clarke, A., Coetzee, S. G., Dhalla, N., Fennell, T., Fisher, S., Gabriel, S., Getz, G., Gibbs, R., Guin, R., Hadjipanayis, A., Hayes, D. N., Hinoue, T., Hoadley, K., Holt, R. A., Hoyle, A. P., Jefferys, S. R., Jones, S., Jones, C. D., Kucherlapati, R., Lai, P. H., Lander, E., Lee, S., Lichtenstein, L., Ma, Y., Maglinte, D. T., Mahadeshwar, H. S., Marra, M. A., Mayo, M., Meng, S., Meyerson, M. L., Mieczkowski, P. A., Moore, R. A., Mose, L. E., Mungall, A. J., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Perou, C. M., Protopopov, A., Ren, X., Roach, J., Sabedot, T. S., Schein, J., Schumacher, S. E., Seidman, J. G., Seth, S., Shen, H., Simons, J. V., Sipahimalani, P., Soloway, M. G., Song, X., Sun, H., Tabak, B., Tam, A., Tan, D., Tang, J., Thiessen, N., Triche, T., Van Den Berg, D. J., Veluvolu, U., Waring, S., Weisenberger, D. J., Wilkerson, M. D., Wong, T., Wu, J., Xi, L., Xu, A. W., Yang, L., Zack, T. I., Zhang, J., Aksoy, B. A., Arachchi, H., Benz, C., Bernard, B., Carlin, D., Cho, J., DiCara, D., Frazer, S., Fuller, G. N., Gao, J. J., Gehlenborg, N., Haussler, D., Heiman, D. I., Iype, L., Jacobsen, A., Ju, Z., Katzman, S., Kim, H., Knijnenburg, T., Kreisberg, R. B., Lawrence, M. S., Lee, W., Leinonen, K., Lin, P., Ling, S., Liu, W., Liu, Y., Liu, Y., Lu, Y., Mills, G. B., Ng, S., Noble, M. S., Paull, E., Rao, A., Reynolds, S., Saksena, G., Sanborn, Z., Sander, C., Schultz, N., Senbabaoglu, Y., Shen, R., Shmulevich, I., Sinha, R., Stuart, J., Sumer, S. O., Sun, Y., Tasman, N., Taylor, B. S., Voet, D., Weinhold, N., Weinstein, J. N., Yang, D., Yoshihara, K., Zheng, S., Zhang, W., Zou, L., Abel, T., Sadeghi, S., Cohen, M. L., Eschbacher, J., Hattab, E. M., Raghunathan, A., Schniederjan, M. J., Aziz, D., Barnett, G., Barrett, W., Bigner, D. D., Boice, L., Brewer, C., Calatozzolo, C., Campos, B., Carlotti, C. G., Chan, T. A., Cuppini, L., Curley, E., Cuzzubbo, S., Devine, K., DiMeco, F., Duell, R., Elder, J. B., Fehrenbach, A., Finocchiaro, G., Friedman, W., Fulop, J., Gardner, J., Hermes, B., Herold-Mende, C., Jungk, C., Kendler, A., Lehman, N. L., Lipp, E., Liu, O., Mandt, R., McGraw, M., Mclendon, R., McPherson, C., Neder, L., Nguyen, P., Noss, A., Nunziata, R., Ostrom, Q. T., Palmer, C., Perin, A., Pollo, B., Potapov, A., Potapova, O., Rathmell, W. K., Rotin, D., Scarpace, L., Schilero, C., Senecal, K., Shimmel, K., Shurkhay, V., Sifri, S., Singh, R., Sloan, A. E., Smolenski, K., Staugaitis, S. M., Steele, R., Thorne, L., Tirapelli, D. P. C., Unterberg, A., Vallurupalli, M., Wang, Y., Warnick, R., Williams, F., Wolinsky, Y., Bell, S., Rosenberg, M., Stewart, C., Huang, F., Grimsby, J. L., Radenbaugh, A. J. & Zhang, J., Jun 25 2015, In: New England Journal of Medicine. 372, 26, p. 2481-2498 18 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2271 Scopus citations

    • Comprehensive genomic characterization of head and neck squamous cell carcinomas

      The Cancer Genome Atlas Network, Jan 29 2015, In: Nature. 517, 7536, p. 576-582 7 p.

      Research output: Contribution to journal › Article › peer-review

      2873 Scopus citations

    • Genomic Classification of Cutaneous Melanoma

      The Cancer Genome Atlas Network, Jun 20 2015, In: Cell. 161, 7, p. 1681-1696 16 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2235 Scopus citations

    • Telomere Dysfunction Drives Aberrant Hematopoietic Differentiation and Myelodysplastic Syndrome

      Colla, S., Ong, D. S. T., Ogoti, Y., Marchesini, M., Mistry, N. A., Clise-Dwyer, K., Ang, S. A., Storti, P., Viale, A., Giuliani, N., Ruisaard, K., Ganan Gomez, I., Bristow, C. A., Estecio, M., Weksberg, D. C., Ho, Y. W., Hu, B., Genovese, G., Pettazzoni, P., Multani, A. S., & 22 othersJiang, S., Hua, S., Ryan, M. C., Carugo, A., Nezi, L., Wei, Y., Yang, H., D'Anca, M., Zhang, L., Gaddis, S., Gong, T., Horner, J. W., Heffernan, T. P., Jones, P., Cooper, L. J. N., Liang, H., Kantarjian, H., Wang, Y. A., Chin, L., Bueso-Ramos, C., Garcia-Manero, G. & DePinho, R. A., May 11 2015, In: Cancer cell. 27, 5, p. 644-657 14 p.

      Research output: Contribution to journal › Article › peer-review

      81 Scopus citations

    • The Molecular Taxonomy of Primary Prostate Cancer

      Abeshouse, A., Ahn, J., Akbani, R., Ally, A., Amin, S., Andry, C. D., Annala, M., Aprikian, A., Armenia, J., Arora, A., Auman, J. T., Balasundaram, M., Balu, S., Barbieri, C. E., Bauer, T., Benz, C. C., Bergeron, A., Beroukhim, R., Berrios, M., Bivol, A., & 292 othersBodenheimer, T., Boice, L., Bootwalla, M. S., Borges Dos Reis, R., Boutros, P. C., Bowen, J., Bowlby, R., Boyd, J., Bradley, R. K., Breggia, A., Brimo, F., Bristow, C. A., Brooks, D., Broom, B. M., Bryce, A. H., Bubley, G., Burks, E., Butterfield, Y. S. N., Button, M., Canes, D., Carlotti, C. G., Carlsen, R., Carmel, M., Carroll, P. R., Carter, S. L., Cartun, R., Carver, B. S., Chan, J. M., Chang, M. T., Chen, Y., Cherniack, A. D., Chevalier, S., Chin, L., Cho, J., Chu, A., Chuah, E., Chudamani, S., Cibulskis, K., Ciriello, G., Clarke, A., Cooperberg, M. R., Corcoran, N. M., Costello, A. J., Cowan, J., Crain, D., Curley, E., David, K., Demchok, J. A., Demichelis, F., Dhalla, N., Dhir, R., Doueik, A., Drake, B., Dvinge, H., Dyakova, N., Felau, I., Ferguson, M. L., Frazer, S., Freedland, S., Fu, Y., Gabriel, S. B., Gao, J., Gardner, J., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Gerstein, M. B., Getz, G., Godwin, A. K., Gopalan, A., Graefen, M., Graim, K., Gribbin, T., Guin, R., Gupta, M., Hadjipanayis, A., Haider, S., Hamel, L., Hayes, D. N., Heiman, D. I., Hess, J., Hoadley, K. A., Holbrook, A. H., Holt, R. A., Holway, A., Hovens, C. M., Hoyle, A. P., Huang, M., Hutter, C. M., Ittmann, M., Iype, L., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Juhl, H., Kahles, A., Kane, C. J., Kasaian, K., Kerger, M., Khurana, E., Kim, J., Klein, R. J., Kucherlapati, R., Lacombe, L., Ladanyi, M., Lai, P. H., Laird, P. W., Lander, E. S., Latour, M., Lawrence, M. S., Lau, K., Lebien, T., Lee, D., Lee, S., Lehmann, K. V., Leraas, K. M., Leshchiner, I., Leung, R., Libertino, J. A., Lichtenberg, T. M., Lin, P., Linehan, W. M., Ling, S., Lippman, S. M., Liu, J., Liu, W., Lochovsky, L., Loda, M., Logothetis, C., Lolla, L., Longacre, T., Lu, Y., Luo, J., Ma, Y., Mahadeshwar, H. S., Mallery, D., Mariamidze, A., Marra, M. A., Mayo, M., McCall, S., McKercher, G., Meng, S., Mes-Masson, A. M., Merino, M. J., Meyerson, M., Mieczkowski, P. A., Mills, G. B., Shaw, K. R. M., Minner, S., Moinzadeh, A., Moore, R. A., Morris, S., Morrison, C., Mose, L. E., Mungall, A. J., Murray, B. A., Myers, J. B., Naresh, R., Nelson, J., Nelson, M. A., Nelson, P. S., Newton, Y., Noble, M. S., Noushmehr, H., Nykter, M., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Paulauskis, J., Penny, R., Perou, C. M., Piché, A., Pihl, T., Pinto, P. A., Prandi, D., Protopopov, A., Ramirez, N. C., Rao, A., Rathmell, W. K., Rätsch, G., Ren, X., Reuter, V. E., Reynolds, S. M., Rhie, S. K., Rieger-Christ, K., Roach, J., Robertson, A. G., Robinson, B., Rubin, M. A., Saad, F., Sadeghi, S., Saksena, G., Saller, C., Salner, A., Sanchez-Vega, F., Sander, C., Sandusky, G., Sauter, G., Sboner, A., Scardino, P. T., Scarlata, E., Schein, J. E., Schlomm, T., Schmidt, L. S., Schultz, N., Schumacher, S. E., Seidman, J., Neder, L., Seth, S., Sharp, A., Shelton, C., Shelton, T., Shen, H., Shen, R., Sherman, M., Sheth, M., Shi, Y., Shih, J., Shmulevich, I., Simko, J., Simon, R., Simons, J. V., Sipahimalani, P., Skelly, T., Sofia, H. J., Soloway, M. G., Song, X., Sorcini, A., Sougnez, C., Stepa, S., Stewart, C., Stewart, J., Stuart, J. M., Sullivan, T. B., Sun, C., Sun, H., Tam, A., Tan, D., Tang, J., Tarnuzzer, R., Tarvin, K., Taylor, B. S., Teebagy, P., Tenggara, I., Têtu, B., Tewari, A., Thiessen, N., Thompson, T., Thorne, L. B., Tirapelli, D. P., Tomlins, S. A., Trevisan, F. A., Troncoso, P., True, L. D., Tsourlakis, M. C., Tyekucheva, S., Van Allen, E., Van Den Berg, D. J., Veluvolu, U., Verhaak, R., Vocke, C. D., Voet, D., Wan, Y., Wang, Q., Wang, W., Wang, Z., Weinhold, N., Weinstein, J. N., Weisenberger, D. J., Wilkerson, M. D., Wise, L., Witte, J., Wu, C. C., Wu, J., Wu, Y., Xu, A. W., Yadav, S. S., Yang, L., Yang, L., Yau, C., Ye, H., Yena, P., Zeng, T., Zenklusen, J. C., Zhang, H., Zhang, J., Zhang, J., Zhang, W., Zhong, Y., Zhu, K. & Zmuda, E., Nov 5 2015, In: Cell. 163, 4, p. 1011-1025 15 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2130 Scopus citations
    • 2016

      Analyzing Somatic Genome Rearrangements in Human Cancers by Using Whole-Exome Sequencing

      Yang, L., Lee, M. S., Lu, H., Oh, D. Y., Kim, Y. J., Park, D., Park, G., Ren, X., Bristow, C. A., Haseley, P. S., Lee, S., Pantazi, A., Kucherlapati, R., Park, W. Y., Scott, K. L., Choi, Y. L. & Park, P. J., May 5 2016, In: American journal of human genetics. 98, 5, p. 843-856 14 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      30 Scopus citations

    • In Vivo Functional Platform Targeting Patient-Derived Xenografts Identifies WDR5-Myc Association as a Critical Determinant of Pancreatic Cancer

      Carugo, A., Genovese, G., Seth, S., Nezi, L., Rose, J. L., Bossi, D., Cicalese, A., Shah, P. K., Viale, A., Pettazzoni, P. F., Akdemir, K. C., Bristow, C. A., Robinson, F. S., Tepper, J., Sanchez, N., Gupta, S., Estecio, M. R., Giuliani, V., Dellino, G. I., Riva, L., & 16 othersYao, W., Di Francesco, M. E., Green, T., D'Alesio, C., Corti, D., Kang, Y., Jones, P., Wang, H., Fleming, J. B., Maitra, A., Pelicci, P. G., Chin, L., DePinho, R. A., Lanfrancone, L., Heffernan, T. P. & Draetta, G. F., Jun 1 2016, In: Cell Reports. 16, 1, p. 133-147 15 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      94 Scopus citations

    • Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma

      Ceccarelli, M., Barthel, F. P., Malta, T. M., Sabedot, T. S., Salama, S. R., Murray, B. A., Morozova, O., Newton, Y., Radenbaugh, A., Pagnotta, S. M., Anjum, S., Wang, J., Manyam, G., Zoppoli, P., Ling, S., Rao, A. A., Grifford, M., Cherniack, A. D., Zhang, H., Poisson, L., & 188 othersCarlotti, C. G., Tirapelli, D. P. D. C., Uppore Kukkillaya, A. R., Mikkelsen, T., Lau, C. C., Yung, W. K. A., Rabadan, R., Huse, J., Brat, D. J., Lehman, N. L., Barnholtz-Sloan, J. S., Zheng, S., Hess, K. R., Rao, G., Meyerson, M., Beroukhim, R., Cooper, L., Akbani, R., Wrensch, M., Haussler, D., Aldape, K. D., Laird, P. W., Gutmann, D. H., Noushmehr, H., Arachchi, H., Auman, J. T., Balasundaram, M., Balu, S., Barnett, G., Baylin, S., Bell, S., Benz, C., Bir, N., Black, K. L., Bodenheimer, T., Boice, L., Bootwalla, M. S., Bowen, J., Bristow, C. A., Butterfield, Y. S. N., Chen, Q. R., Chin, L., Cho, J., Chuah, E., Chudamani, S., Coetzee, S. G., Cohen, M. L., Colman, H., Couce, M., D'Angelo, F., Davidsen, T., Davis, A., Demchok, J. A., Devine, K., Ding, L., Duell, R., Elder, J. B., Eschbacher, J. M., Fehrenbach, A., Ferguson, M., Frazer, S., Fuller, G., Fulop, J., Gabriel, S. B., Garofano, L., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Getz, G., Giannini, C., Gibson, W. J., Hadjipanayis, A., Hayes, D. N., Heiman, D. I., Hermes, B., Hilty, J., Hoadley, K. A., Hoyle, A. P., Huang, M., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Ju, Z., Kastl, A., Kendler, A., Kim, J., Kucherlapati, R., Lai, P. H., Lawrence, M. S., Lee, S., Leraas, K. M., Lichtenberg, T. M., Lin, P., Liu, Y., Liu, J., Ljubimova, J. Y., Lu, Y., Ma, Y., Maglinte, D. T., Mahadeshwar, H. S., Marra, M. A., McGraw, M., McPherson, C., Meng, S., Mieczkowski, P. A., Miller, C. R., Mills, G. B., Moore, R. A., Mose, L. E., Mungall, A. J., Naresh, R., Naska, T., Neder, L., Noble, M. S., Noss, A., O'Neill, B. P., Ostrom, Q. T., Palmer, C., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Perou, C. M., Pierson, C. R., Pihl, T., Protopopov, A., Radenbaugh, A., Ramirez, N. C., Rathmell, W. K., Ren, X., Roach, J., Robertson, A. G., Saksena, G., Schein, J. E., Schumacher, S. E., Seidman, J., Senecal, K., Seth, S., Shen, H., Shi, Y., Shih, J., Shimmel, K., Sicotte, H., Sifri, S., Silva, T., Simons, J. V., Singh, R., Skelly, T., Sloan, A. E., Sofia, H. J., Soloway, M. G., Song, X., Sougnez, C., Souza, C., Staugaitis, S. M., Sun, H., Sun, C., Tan, D., Tang, J., Tang, Y., Thorne, L., Trevisan, F. A., Triche, T., Van Den Berg, D. J., Veluvolu, U., Voet, D., Wan, Y., Wang, Z., Warnick, R., Weinstein, J. N., Weisenberger, D. J., Wilkerson, M. D., Williams, F., Wise, L., Wolinsky, Y., Wu, J., Xu, A. W., Yang, L., Yang, L., Zack, T. I., Zenklusen, J. C., Zhang, J., Zhang, W., Zhang, J., Zmuda, E., Noushmehr, H., Iavarone, A. & Verhaak, R., Jan 28 2016, In: Cell. 164, 3, p. 550-563 14 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1446 Scopus citations
    • 2017

      4-1BB agonist focuses CD8+ tumor-infiltrating T-Cell growth into a distinct repertoire capable of tumor recognition in pancreatic cancer

      Sakellariou-Thompson, D., Forget, M. A., Creasy, C., Bernard, V., Zhao, L., Kim, Y. U., Hurd, M. W., Uraoka, N., Parra, E. R., Kang, Y., Bristow, C. A., Rodriguez-Canales, J., Fleming, J. B., Varadhachary, G., Javle, M., Overman, M. J., Alvarez, H. A., Heffernan, T. P., Zhang, J., Hwu, P., & 3 othersMaitra, A., Haymaker, C. & Bernatchez, C., Dec 1 2017, In: Clinical Cancer Research. 23, 23, p. 7263-7275 13 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      41 Scopus citations

    • A Pan-Cancer Proteogenomic Atlas of PI3K/AKT/mTOR Pathway Alterations

      Zhang, Y., Kwok-Shing Ng, P., Kucherlapati, M., Chen, F., Liu, Y., Tsang, Y. H., de Velasco, G., Jeong, K. J., Akbani, R., Hadjipanayis, A., Pantazi, A., Bristow, C. A., Lee, E., Mahadeshwar, H. S., Tang, J., Zhang, J., Yang, L., Seth, S., Lee, S., Ren, X., & 22 othersSong, X., Sun, H., Seidman, J., Luquette, L. J., Xi, R., Chin, L., Protopopov, A., Westbrook, T. F., Shelley, C. S., Choueiri, T. K., Ittmann, M., Van Waes, C., Weinstein, J. N., Liang, H., Henske, E. P., Godwin, A. K., Park, P. J., Kucherlapati, R., Scott, K. L., Mills, G. B., Kwiatkowski, D. J. & Creighton, C. J., Jun 12 2017, In: Cancer cell. 31, 6, p. 820-832.e3

      Research output: Contribution to journal › Article › peer-review

      Open Access
      382 Scopus citations

    • Integrated genomic and molecular characterization of cervical cancer

      The Cancer Genome Atlas Research Network, Mar 16 2017, In: Nature. 543, 7645, p. 378-384 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      985 Scopus citations

    • Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma

      Robertson, A. G., Shih, J., Yau, C., Gibb, E. A., Oba, J., Mungall, K. L., Hess, J. M., Uzunangelov, V., Walter, V., Danilova, L., Lichtenberg, T. M., Kucherlapati, M., Kimes, P. K., Tang, M., Penson, A., Babur, O., Akbani, R., Bristow, C. A., Hoadley, K. A., Iype, L., & 150 othersChang, M. T., Abdel-Rahman, M. H., Ally, A., Auman, J. T., Balasundaram, M., Balu, S., Benz, C., Beroukhim, R., Birol, I., Bodenheimer, T., Bowen, J., Bowlby, R., Brooks, D., Carlsen, R., Cebulla, C. M., Cherniack, A. D., Chin, L., Cho, J., Chuah, E., Chudamani, S., Cibulskis, C., Cibulskis, K., Cope, L., Coupland, S. E., Defreitas, T., Demchok, J. A., Desjardins, L., Dhalla, N., Esmaeli, B., Felau, I., Ferguson, M. L., Frazer, S., Gabriel, S. B., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Gershenwald, J. E., Getz, G., Griewank, K. G., Grimm, E. A., Hayes, D. N., Hegde, A. M., Heiman, D. I., Helsel, C., Hobensack, S., Holt, R. A., Hoyle, A. P., Hu, X., Hutter, C. M., Jager, M. J., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Kandoth, C., Kasaian, K., Kim, J., Kucherlapati, R., Lander, E., Lawrence, M. S., Lazar, A. J., Lee, S., Leraas, K. M., Lin, P., Liu, J., Liu, W., Lolla, L., Lu, Y., Ma, Y., Mahadeshwar, H. S., Mariani, O., Marra, M. A., Mayo, M., Meier, S., Meng, S., Meyerson, M., Mieczkowski, P. A., Mills, G. B., Moore, R. A., Mose, L. E., Mungall, A. J., Murray, B. A., Naresh, R., Noble, M. S., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Perou, C. M., Pihl, T., Pilarski, R., Protopopov, A., Radenbaugh, A., Rai, K., Ramirez, N. C., Ren, X., Reynolds, S. M., Roach, J., Roman-Roman, S., Roszik, J., Sadeghi, S., Saksena, G., Sastre, X., Schadendorf, D., Schein, J. E., Schoenfield, L., Schumacher, S. E., Seidman, J., Seth, S., Sethi, G., Sheth, M., Shi, Y., Shields, C., Shmulevich, I., Simons, J. V., Singh, A. D., Sipahimalani, P., Skelly, T., Sofia, H., Soloway, M. G., Song, X., Stern, M. H., Stuart, J., Sun, Q., Sun, H., Tam, A., Tan, D., Tang, J., Tarnuzzer, R., Taylor, B. S., Thiessen, N., Thorsson, V., Tse, K., Veluvolu, U., Verhaak, R., Voet, D., Wan, Y., Wang, Z., Weinstein, J. N., Wilkerson, M. D., Williams, M. D., Wise, L., Woodman, S. E., Wong, T., Wu, Y., Yang, L., Yang, L., Zenklusen, J. C., Zhang, J., Zhang, H. & Zmuda, E., Aug 14 2017, In: Cancer cell. 32, 2, p. 204-220.e15

      Research output: Contribution to journal › Article › peer-review

      Open Access
      563 Scopus citations

    • Modeling of patient-derived xenografts in colorectal cancer

      Katsiampoura, A., Raghav, K., Jiang, Z. Q., Menter, D. G., Varkaris, A., Morelli, M. P., Manuel, S., Wu, J., Sorokin, A. V., Rizi, B. S., Bristow, C., Tian, F., Airhart, S., Cheng, M., Broom, B. M., Morris, J., Overman, M. J., Powis, G. & Kopetz, S., Jul 2017, In: Molecular cancer therapeutics. 16, 7, p. 1435-1442 8 p.

      Research output: Contribution to journal › Article › peer-review

      41 Scopus citations

    • PAF promotes stemness and radioresistance of glioma stem cells

      Ong, D. S. T., Hu, B., Ho, Y. W., Sauvé, C. E. G., Bristow, C. A., Wang, Q., Multani, A. S., Chen, P., Nezi, L., Jiang, S., Gorman, C. E., Monasterio, M. M., Koul, D., Marchesini, M., Colla, S., Jin, E. J., Sulman, E. P., Spring, D. J., Yung, W. K. A., Verhaak, R. G. W., & 3 othersChin, L., Wang, Y. A. & DePinho, R. A., Oct 24 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 43, p. E9085-E9095

      Research output: Contribution to journal › Article › peer-review

      Open Access
      38 Scopus citations

    • PRKCI promotes immune suppression in ovarian cancer

      Sarkar, S., Bristow, C. A., Dey, P., Rai, K., Perets, R., Ramirez-Cardenas, A., Malasi, S., Huang-Hobbs, E., Haemmerle, M., Wu, S. Y., McGuire, M., Protopopov, A., Jiang, S., Liu, J. F., Hirsch, M. S., Chang, Q., Lazar, A. J., Sood, A. K., Drapkin, R., DePinho, R., & 2 othersDraetta, G. & Chin, L., 2017, In: Genes and Development. 31, 11, p. 1109-1121 13 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      59 Scopus citations

    • The Stromal Microenvironment Modulates Mitochondrial Oxidative Phosphorylation in Chronic Lymphocytic Leukemia Cells

      Vangapandu, H. V., Ayres, M. L., Bristow, C. A., Wierda, W. G., Keating, M. J., Balakrishnan, K., Stellrecht, C. M. & Gandhi, V., Oct 2017, In: Neoplasia (United States). 19, 10, p. 762-771 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      30 Scopus citations
    • 2018

      A functional genomic screen in vivo identifies CEACAM5 as a clinically relevant driver of breast cancer metastasis

      Powell, E., Shao, J., Picon, H. M., Bristow, C., Ge, Z., Peoples, M., Robinson, F., Jeter-Jones, S. L., Schlosberg, C., Grzeskowiak, C. L., Yang, F., Wu, Y., Wistuba, I., Moulder, S., Symmans, W. F., Scott, K. L., Edwards, J. R., Liang, H., Heffernan, T. P. & Piwnica-Worms, H., Dec 1 2018, In: npj Breast Cancer. 4, 1, 9.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      30 Scopus citations

    • An inhibitor of oxidative phosphorylation exploits cancer vulnerability

      Molina, J. R., Sun, Y., Protopopova, M., Gera, S., Bandi, M., Bristow, C., McAfoos, T., Morlacchi, P., Ackroyd, J., Agip, A. N. A., Al-Atrash, G., Asara, J., Bardenhagen, J., Carrillo, C. C., Carroll, C., Chang, E., Ciurea, S., Cross, J. B., Czako, B., Deem, A., & 46 othersDaver, N., De Groot, J. F., Dong, J. W., Feng, N., Gao, G., Gay, J., Do, M. G., Greer, J., Giuliani, V., Han, J., Han, L., Henry, V. K., Hirst, J., Huang, S., Jiang, Y., Kang, Z., Khor, T., Konoplev, S., Lin, Y. H., Liu, G., Lodi, A., Lofton, T., Ma, H., Mahendra, M., Matre, P., Mullinax, R., Peoples, M., Petrocchi, A., Rodriguez-Canale, J., Serreli, R., Shi, T., Smith, M., Tabe, Y., Theroff, J., Tiziani, S., Xu, Q., Zhang, Q., Muller, F., Depinho, R. A., Toniatti, C., Draetta, G. F., Heffernan, T. P., Konopleva, M., Jones, P., Di Francesco, M. E. & Marszalek, J. R., Jul 1 2018, In: Nature medicine. 24, 7, p. 1036-1046 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      553 Scopus citations

    • A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases

      Zhang, Y., Yang, L., Kucherlapati, M., Chen, F., Hadjipanayis, A., Pantazi, A., Bristow, C. A., Lee, E. A., Mahadeshwar, H. S., Tang, J., Zhang, J., Seth, S., Lee, S., Ren, X., Song, X., Sun, H., Seidman, J., Luquette, L. J., Xi, R., Chin, L., & 5 othersProtopopov, A., Li, W., Park, P. J., Kucherlapati, R. & Creighton, C. J., Jul 10 2018, In: Cell Reports. 24, 2, p. 515-527 13 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      61 Scopus citations

    • High-resolution clonal mapping of multi-organ metastasis in triple negative breast cancer

      Echeverria, G. V., Powell, E., Seth, S., Ge, Z., Carugo, A., Bristow, C., Peoples, M., Robinson, F., Qiu, H., Shao, J., Jeter-Jones, S. L., Zhang, X., Ramamoorthy, V., Cai, S., Wu, W., Draetta, G., Moulder, S. L., Symmans, W. F., Chang, J. T., Heffernan, T. P., & 1 othersPiwnica-Worms, H., Dec 1 2018, In: Nature communications. 9, 1, 5079.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      82 Scopus citations

    • Increased Tumor Glycolysis Characterizes Immune Resistance to Adoptive T Cell Therapy

      Cascone, T., McKenzie, J. A., Mbofung, R. M., Punt, S., Wang, Z., Xu, C., Williams, L. J., Wang, Z., Bristow, C. A., Carugo, A., Peoples, M. D., Li, L., Karpinets, T., Huang, L., Malu, S., Creasy, C., Leahey, S. E., Chen, J., Chen, Y., Pelicano, H., & 17 othersBernatchez, C., Gopal, Y. N. V., Heffernan, T. P., Hu, J., Wang, J., Amaria, R. N., Garraway, L. A., Huang, P., Yang, P., Wistuba, I. I., Woodman, S. E., Roszik, J., Davis, R. E., Davies, M. A., Heymach, J. V., Hwu, P. & Peng, W., May 1 2018, In: Cell Metabolism. 27, 5, p. 977-987.e4

      Research output: Contribution to journal › Article › peer-review

      Open Access
      381 Scopus citations

    • Molecular landscape of ErbB2/ErbB3 mutated colorectal cancer

      Loree, J. M., Bailey, A. M., Johnson, A. M., Yu, Y., Wu, W., Bristow, C. A., Davis, J. S., Shaw, K. R., Broaddus, R., Banks, K. C., Lanman, R. B., Meric-Bernstam, F., Overman, M. J., Kopetz, S. & Raghav, K., Dec 1 2018, In: Journal of the National Cancer Institute. 110, 12, p. 1409-1417 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      47 Scopus citations

    • PPM1D Mutations Drive Clonal Hematopoiesis in Response to Cytotoxic Chemotherapy

      Hsu, J. I., Dayaram, T., Tovy, A., De Braekeleer, E., Jeong, M., Wang, F., Zhang, J., Heffernan, T. P., Gera, S., Kovacs, J. J., Marszalek, J. R., Bristow, C., Yan, Y., Garcia-Manero, G., Kantarjian, H., Vassiliou, G., Futreal, P. A., Donehower, L. A., Takahashi, K. & Goodell, M. A., Nov 1 2018, In: Cell Stem Cell. 23, 5, p. 700-713.e6

      Research output: Contribution to journal › Article › peer-review

      Open Access
      250 Scopus citations
    • 2019

      Functional Genomics Reveals Synthetic Lethality between Phosphogluconate Dehydrogenase and Oxidative Phosphorylation

      Sun, Y., Bandi, M., Lofton, T., Smith, M., Bristow, C. A., Carugo, A., Rogers, N., Leonard, P., Chang, Q., Mullinax, R., Han, J., Shi, X., Seth, S., Meyers, B. A., Miller, M., Miao, L., Ma, X., Feng, N., Giuliani, V., Geck Do, M., & 18 othersCzako, B., Palmer, W. S., Mseeh, F., Asara, J. M., Jiang, Y., Morlacchi, P., Zhao, S., Peoples, M., Tieu, T. N., Warmoes, M. O., Lorenzi, P. L., Muller, F., DePinho, R. A., Draetta, G. F., Toniatti, C., Jones, P., Heffernan, T. P. & Marszalek, J. R., Jan 8 2019, In: Cell Reports. 26, 2, p. 469-482.e5

      Research output: Contribution to journal › Article › peer-review

      Open Access
      38 Scopus citations

    • Global impact of somatic structural variation on the DNA methylome of human cancers

      Zhang, Y., Yang, L., Kucherlapati, M., Hadjipanayis, A., Pantazi, A., Bristow, C. A., Lee, E. A., Mahadeshwar, H. S., Tang, J., Zhang, J., Seth, S., Lee, S., Ren, X., Song, X., Sun, H., Seidman, J., Luquette, L. J., Xi, R., Chin, L., Protopopov, A., & 3 othersPark, P. J., Kucherlapati, R. & Creighton, C. J., Oct 15 2019, In: Genome biology. 20, 1, 209.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      23 Scopus citations

    • Ntrk1 promotes resistance to PD-1 checkpoint blockade in Mesenchymal Kras/p53 mutant lung cancer

      Konen, J. M., Rodriguez, B. L., Fradette, J. J., Gibson, L., Davis, D., Minelli, R., Peoples, M. D., Kovacs, J., Carugo, A., Bristow, C., Heffernan, T. & Gibbons, D. L., Apr 2019, In: Cancers. 11, 4, 462.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      19 Scopus citations

    • Pooled library screening with multiplexed Cpf1 library

      Liu, J., Srinivasan, S., Li, C. Y., Ho, I. L., Rose, J., Shaheen, M. A., Wang, G., Yao, W., Deem, A., Bristow, C., Hart, T. & Draetta, G., Dec 1 2019, In: Nature communications. 10, 1, 3144.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      31 Scopus citations

    • Predictive signatures inform the effective repurposing of decitabine to treat KRAS-dependent pancreatic ductal adenocarcinoma

      Mottini, C., Tomihara, H., Carrella, D., Lamolinara, A., Iezzi, M., Huang, J. K., Amoreo, C. A., Buglioni, S., Manni, I., Robinson, F. S., Minelli, R., Kang, Y., Fleming, J. B., Kim, M. P., Bristow, C. A., Trisciuoglio, D., Iuliano, A., Bufalo, D. D., Bernardo, D. D., Melisi, D., & 4 othersDraetta, G. F., Ciliberto, G., Carugo, A. & Cardone, L., Nov 1 2019, In: Cancer Research. 79, 21, p. 5612-5625 14 p.

      Research output: Contribution to journal › Article › peer-review

      11 Scopus citations

    • Resistance to neoadjuvant chemotherapy in triple-negative breast cancer mediated by a reversible drug-tolerant state

      Echeverria, G. V., Ge, Z., Seth, S., Zhang, X., Jeter-Jones, S., Zhou, X., Cai, S., Tu, Y., McCoy, A., Peoples, M., Sun, Y., Qiu, H., Chang, Q., Bristow, C., Carugo, A., Shao, J., Ma, X., Harris, A., Mundi, P., Lau, R., & 10 othersRamamoorthy, V., Wu, Y., Alvarez, M. J., Califano, A., Moulder, S. L., Symmans, W. F., Marszalek, J. R., Heffernan, T. P., Chang, J. T. & Piwnica-Worms, H., Apr 17 2019, In: Science translational medicine. 11, 488, eaav0936.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      177 Scopus citations

    • YAP1 oncogene is a context-specific driver for pancreatic ductal adenocarcinoma

      Tu, B., Yao, J., Ferri-Borgogno, S., Zhao, J., Chen, S., Wang, Q., Yan, L., Zhou, X., Zhu, C., Bang, S., Chang, Q., Bristow, C. A., Kang, Y., Zheng, H., Wang, H., Fleming, J. B., Kim, M., Heffernan, T. P., Draetta, G. F., Pan, D., & 4 othersMaitra, A., Yao, W., Gupta, S. & Ying, H., Nov 1 2019, In: JCI Insight. 4, 21, e130811.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      41 Scopus citations

    • ZEB1/NuRD complex suppresses TBC1D2b to stimulate E-cadherin internalization and promote metastasis in lung cancer

      Manshouri, R., Coyaud, E., Kundu, S. T., Peng, D. H., Stratton, S. A., Alton, K., Bajaj, R., Fradette, J. J., Minelli, R., Peoples, M. D., Carugo, A., Chen, F., Bristow, C., Kovacs, J. J., Barton, M. C., Heffernan, T., Creighton, C. J., Raught, B. & Gibbons, D. L., Dec 1 2019, In: Nature communications. 10, 1, 5125.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      66 Scopus citations

    • ZEB1 suppression sensitizes KRAS mutant cancers to MEK inhibition by an IL17RD-dependent mechanism

      Peng, D. H., Kundu, S. T., Fradette, J. J., Diao, L., Tong, P., Byers, L. A., Wang, J., Canales, J. R., Villalobos, P. A., Mino, B., Yang, Y., Minelli, R., Peoples, M. D., Bristow, C. A., Heffernan, T. P., Carugo, A., Wistuba, I. I. & Gibbons, D. L., 2019, In: Science translational medicine. 11, 483, eaaq1238.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      40 Scopus citations
    • 2020

      Allosteric SHP2 inhibitor, IACS-13909, overcomes EGFR-dependent and EGFR-independent resistance mechanisms toward osimertinib

      Sun, Y., Meyers, B. A., Czako, B., Leonard, P., Mseeh, F., Harris, A. L., Wu, Q., Johnson, S., Parker, C. A., Cross, J. B., Di Francesco, M. E., Bivona, B. J., Bristow, C. A., Burke, J. P., Carrillo, C. C., Carroll, C. L., Chang, Q., Feng, N., Gao, G., Gera, S., & 25 othersGiuliani, V., Huang, J. K., Jiang, Y., Kang, Z., Kovacs, J. J., Liu, C. Y., Lopez, A. M., Ma, X., Mandal, P. K., McAfoos, T., Miller, M. A., Mullinax, R. A., Peoples, M., Ramamoorthy, V., Seth, S., Spencer, N. D., Suzuki, E., Williams, C. C., Yu, S. S., Zuniga, A. M., Draetta, G. F., Marszalek, J. R., Heffernan, T. P., Kohl, N. E. & Jones, P., Nov 1 2020, In: Cancer Research. 80, 21, p. 4840-4853 14 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      47 Scopus citations

    • Discovery of IPN60090, a Clinical Stage Selective Glutaminase-1 (GLS-1) Inhibitor with Excellent Pharmacokinetic and Physicochemical Properties

      Soth, M. J., Le, K., Di Francesco, M. E., Hamilton, M. M., Liu, G., Burke, J. P., Carroll, C. L., Kovacs, J. J., Bardenhagen, J. P., Bristow, C. A., Cardozo, M., Czako, B., De Stanchina, E., Feng, N., Garvey, J. R., Gay, J. P., Do, M. K. G., Greer, J., Han, M., Harris, A., & 27 othersHerrera, Z., Huang, S., Giuliani, V., Jiang, Y., Johnson, S. B., Johnson, T. A., Kang, Z., Leonard, P. G., Liu, Z., McAfoos, T., Miller, M., Morlacchi, P., Mullinax, R. A., Palmer, W. S., Pang, J., Rogers, N., Rudin, C. M., Shepard, H. E., Spencer, N. D., Theroff, J., Wu, Q., Xu, A., Yau, J. A., Draetta, G., Toniatti, C., Heffernan, T. P. & Jones, P., Nov 12 2020, In: Journal of Medicinal Chemistry. 63, 21, p. 12957-12977 21 p.

      Research output: Contribution to journal › Article › peer-review

      48 Scopus citations

    • Vestigial-like 1 is a shared targetable cancer-placenta antigen expressed by pancreatic and basal-like breast cancers

      Bradley, S. D., Talukder, A. H., Lai, I., Davis, R., Alvarez, H., Tiriac, H., Zhang, M., Chiu, Y., Melendez, B., Jackson, K. R., Katailiha, A., Sonnemann, H. M., Li, F., Kang, Y., Qiao, N., Pan, B. F., Lorenzi, P. L., Hurd, M., Mittendorf, E. A., Peterson, C. B., & 12 othersJavle, M., Bristow, C., Kim, M., Tuveson, D. A., Hawke, D., Kopetz, S., Wolff, R. A., Hwu, P., Maitra, A., Roszik, J., Yee, C. & Lizée, G., Dec 1 2020, In: Nature communications. 11, 1, 5332.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      11 Scopus citations