The University of Texas MD Anderson Cancer Center

  • United States

Research Output 1906 2019

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Conference article
2018

Hybrid MPI+OpenMP parallelization of image reconstruction in proton beam therapy on multi-core and many-core processors

Giustina, J. D., Barajas, C., Gobbert, M. K., Mackin, D. S. & Polf, J., Jan 1 2018, In : Simulation Series. 50, 4, p. 118-128 11 p.

Research output: Contribution to journalConference article

Image reconstruction
Dosimetry
Imaging techniques
Cameras
Tissue

Revealing hidden potentials of the q-space signal in breast cancer

Jaeger, P., Bickelhaupt, S., Laun, F. B., Lederer, W., Heidi, D., Kuder, T. A., Paech, D., Bonekamp, D., Radbruch, A., Delorme, S., Schlemmer, H-P., Steudle, F. & Maier-Hein, K. H., Jan 1 2018, In : Informatik aktuell. 211279, 1 p.

Research output: Contribution to journalConference article

Biopsy
Breast Cancer
False Positive
Mammography
Information Loss
2017

3rd Plenary invited talk: Secondary neutrons from proton radiation therapy

Howell, R. M., Sep 25 2017, In : EPJ Web of Conferences. 153

Research output: Contribution to journalConference article

radiation therapy
neutrons
protons

Development of a liquid scintillator-based 3D detector for range measurements of spot-scanned proton beams

Darne, C. D., Robertson, D. & Beddar, S., Jun 5 2017, In : Journal of Physics: Conference Series. 847, 1, 012020.

Research output: Contribution to journalConference article

rangefinding
proton beams
scintillation counters
detectors
liquids
2 Citations (Scopus)

Dosimetry in the presence of strong magnetic fields

O'Brien, D., Schupp, N., Pencea, S., Dolan, J. & Sawakuchi, G. O., Jun 5 2017, In : Journal of Physics: Conference Series. 847, 1, 012055.

Research output: Contribution to journalConference article

dosimeters
dosage
ionization chambers
magnetic fields
detectors

Evaluating analytical ionization quenching correction models for 3D liquid organic scintillator detector

Alsanea, F. & Beddar, S., Jun 5 2017, In : Journal of Physics: Conference Series. 847, 1, 012022.

Research output: Contribution to journalConference article

organic liquids
scintillation counters
proton beams
quenching
ionization

Identifying cancer specific metabolic signatures using constraint-based models

Schultz, A., Mehta, S., Hu, C. W., Hoff, F. W., Horton, T. M., Kornblau, S. M. & Qutub, A. A., Jan 1 2017, In : Pacific Symposium on Biocomputing. 0, 212679, p. 485-496 12 p.

Research output: Contribution to journalConference article

Monte Carlo Method
Biological Models
Metabolic Networks and Pathways
Computational Biology
Tumor Cell Line
scintillation counters
detectors
luminescence
ruby
dynamic range

In vivo verification of particle therapy: How Compton camera configurations affect 3D image quality

Mackin, D. S., Draeger, E., Peterson, S., Polf, J. & Beddar, S., Jun 5 2017, In : Journal of Physics: Conference Series. 847, 1, 012045.

Research output: Contribution to journalConference article

therapy
cameras
configurations
dosage
margins

Is there a role for 3D dosimetry in low- and middle-income countries?

Court, L. E., Jun 5 2017, In : Journal of Physics: Conference Series. 847, 1, 012011.

Research output: Contribution to journalConference article

income
dosimeters
radiation therapy
cancer
costs

Patient-specific quality assurance for spot scanning proton beams using a large-volume liquid scintillator detector

Robertson, D. & Beddar, S., Jun 5 2017, In : Journal of Physics: Conference Series. 847, 1, 012005.

Research output: Contribution to journalConference article

assurance
proton beams
scintillation counters
dosage
scanning

The IROC Houston Quality Assurance Program: Potential benefits of 3D dosimetry

Followill, D. S., Molineu, H. A., Lafratta, R. & Ibbott, G., Jun 5 2017, In : Journal of Physics: Conference Series. 847, 1, 012029.

Research output: Contribution to journalConference article

Houston (TX)
assurance
dosimeters
dosage
spine
3 Citations (Scopus)

The potential of polymer gel dosimeters for 3D MR-IGRT quality assurance

Roed, Y., Ding, Y., Wen, Z., Wang, J., Pinsky, L. & Ibbott, G., Jun 5 2017, In : Journal of Physics: Conference Series. 847, 1, 012059.

Research output: Contribution to journalConference article

assurance
dosimeters
magnetic resonance
gels
polymers

The quenching effect in PRESAGE® by a proton beam: Investigation of formulation dependence

Carroll, M., Alqathami, M. & Ibbott, G., Jun 5 2017, In : Journal of Physics: Conference Series. 847, 1, 012027.

Research output: Contribution to journalConference article

proton beams
quenching
formulations
linear energy transfer (LET)
dosimeters
2 Citations (Scopus)

Using 3D dosimetry to quantify the Electron Return Effect (ERE) for MR-image-guided radiation therapy (MR-IGRT) applications

Lee, H. J., Won Choi, G., Alqathami, M., Kadbi, M. & Ibbott, G., Jun 5 2017, In : Journal of Physics: Conference Series. 847, 1, 012057.

Research output: Contribution to journalConference article

dosimeters
radiation therapy
dosage
electrons
tomography
2016

First direct measurement of 12C(12C,n)23Mg at stellar energies

Tang, X. D., Bucher, B., Fang, X., Heger, A., Almaraz-Calderon, S., Alongi, A., Ayangeakaa, A. D., Beard, M., Best, A., Browne, J., Cahillane, C., Couder, M., DeBoer, R. J., Kontos, A., Lamm, L., Li, Y. J., Long, A., Lu, W., Lyons, S., Notani, M. & 11 othersPatel, D. C., Paul, N., Pignatari, M., Roberts, A., Robertson, D., Smith, K., Stech, E., Talwar, R., Tan, W. P., Wiescher, M. & Woosley, S. E., Feb 12 2016, In : EPJ Web of Conferences. 109, 04009.

Research output: Contribution to journalConference article

astrophysics
extrapolation
nuclear fusion
supernovae
energy

The impact of quality control in RNA-seq experiments

Merino, G. A., Fresno, C., Netto, F. O. G., Netto, E. D., Pratto, L. & Fernández, E. A., Jan 1 2016, In : Journal of Physics: Conference Series. 705, 1, 012003.

Research output: Contribution to journalConference article

quality control
information retrieval
sequencing
principal components analysis
genes
2015
2 Citations (Scopus)

An investigation into the potential influence of oxygen on the efficiency of the PRESAGE® dosimeter

Alqathami, M., Blencowe, A. & Ibbott, G., Jan 1 2015, In : Journal of Physics: Conference Series. 573, 1, 012044.

Research output: Contribution to journalConference article

dosimeters
oxygen
dosage
sensitivity
initiators
5 Citations (Scopus)

Audits for advanced treatment dosimetry

Ibbott, G. & Thwaites, D. I., Jan 1 2015, In : Journal of Physics: Conference Series. 573, 1, 012002.

Research output: Contribution to journalConference article

dosimeters
assurance
radiation therapy
therapy
modulation
3 Citations (Scopus)

Comparison of 2D and 3D Gamma calculations for an IMRT QA phantom

Lafratta, R., Ibbott, G., Adamovics, J. & Followill, D. S., Jan 1 2015, In : Journal of Physics: Conference Series. 573, 1, 012055.

Research output: Contribution to journalConference article

dosimeters
inserts
pixels
dosage

Erfolgreiche lehr/lernmethoden in zwei online-studiengängen der universität heidelberg

Schäfer, M., Barthold-Beß, S., Debus, J., Gebauer-Hötzel, L., Niedermaier, I., Jäkel, O. & Schlegel, W., Jan 1 2015, In : CEUR Workshop Proceedings. 1443, p. 143-150 8 p.

Research output: Contribution to journalConference article

E-learning
Teaching
1 Citations (Scopus)

Feasibility of PET/CT 3-D dosimetry for proton-activated PRESAGE® dosimeters

Carroll, M., Ibbott, G. & Adamovics, J., Jan 1 2015, In : Journal of Physics: Conference Series. 573, 1, 012071.

Research output: Contribution to journalConference article

dosimeters
activation
protons
dosage
profiles

Functional nonlinear mixed effects models for longitudinal image data

Luo, X., Zhu, L., Kong, L. & Zhu, H., Jan 1 2015, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9123, p. 794-805 12 p.

Research output: Contribution to journalConference article

Nonlinear Mixed Effects Model
Trajectories
Simultaneous Confidence Bands
Trajectory
Covariance Operator
4 Citations (Scopus)

Real-time volumetric scintillation dosimetry

Beddar, S., Jan 1 2015, In : Journal of Physics: Conference Series. 573, 1, 012005.

Research output: Contribution to journalConference article

scintillation
dosimeters
scintillation counters
dosage
linear energy transfer (LET)

Scientific hangman: Gamifying scientific evidence for general public

Moazzam, W., Riegler, M., Sen, S. & Nygård, M., Jan 1 2015, In : CEUR Workshop Proceedings. 1345, p. 26-33 8 p.

Research output: Contribution to journalConference article

Digital libraries
Screening
Students
Feedback
Communication
1 Citations (Scopus)
Principal Component Regression
High-dimensional
Neuroimaging
Prediction
Time series
5 Citations (Scopus)

Surgical tool pose estimation from monocular endoscopic videos

Kumar, S., Sovizi, J., Narayanan, M. S. & Krovi, V., Jan 1 2015, In : Proceedings - IEEE International Conference on Robotics and Automation. 2015-June, June, p. 598-603 6 p., 7139240.

Research output: Contribution to journalConference article

Cameras
Feedback
Robotics
Semantics
Geometry
2014

A new method for intraoperative quantification of mitral leaflet segment prolapse

Engelhardt, S., De Simone, R., Zimmermann, N., Karck, M., Meinzer, H-P., Nabers, D. & Wolf, I., Jan 1 2014, In : Computing in Cardiology. 41, January, p. 961-964 4 p., 7043204.

Research output: Contribution to journalConference article

Hooks
Prolapse
Mitral Valve
Swine
Surgery

A quantitative evaluation of errors induced by reduced field-of-view in diffusion tensor imaging

Hering, J., Wolf, I., Meinzer, H-P., Stieltjes, B. & Maier-Hein, K. H., Jan 1 2014, In : Mathematics and Visualization. 0, p. 35-44 10 p.

Research output: Contribution to journalConference article

Diffusion tensor imaging
Quantitative Evaluation
Field of View
Tensor
Imaging
5 Citations (Scopus)

Automatic treatment planning implementation using a database of previously treated patients

Moore, J. A., Evans, K., Yang, W., Herman, J. M. & McNutt, T., Jan 1 2014, In : Journal of Physics: Conference Series. 489, 1, 012054.

Research output: Contribution to journalConference article

planning
dosage
histograms
toxicity
pancreas
3 Citations (Scopus)

Browser based platform in maintaining clinical activities-use of the ipads in head and neck clinics

Yang, W. Y., Moore, J., Quon, H., Evans, K., Sharabi, A., Herman, J. M., Hacker-Prietz, A. & McNutt, T., Jan 1 2014, In : Journal of Physics: Conference Series. 489, 1, 012095.

Research output: Contribution to journalConference article

platforms
physicians
documentation
workstations
incompatibility
1 Citations (Scopus)

Development of optical sensor for soft tissue sarcoma boundary detection using optical coherence elastography

Wang, S., Li, J., Pollock, R. E., Larina, I. V. & Larin, K. V., Jan 1 2014, In : Proceedings of IEEE Sensors. 2014-December, December, p. 1877-1880 4 p., 6985395.

Research output: Contribution to journalConference article

Optical sensors
Tissue
Tumors
Mechanical waves
Air
4 Citations (Scopus)

Fast construction of surrogates for UQ central to DDDAS - Application to volcanic ash transport

Stefanescu, E. R., Patra, A. K., Bursik, M., Jones, M., Madankan, R., Pitman, E. B., Pouget, S., Singh, T., Singla, P., Webley, P. & Morton, D., Jan 1 2014, In : Procedia Computer Science. 29, p. 1227-1235 9 p.

Research output: Contribution to journalConference article

Ashes
Simulators
Uncertainty
4 Citations (Scopus)

Global changes in the connectome in autism spectrum disorders

Goch, C. J., Oztan, B., Stieltjes, B., Henze, R., Hering, J., Poustka, L., Meinzer, H-P., Yener, B. & Maier-Hein, K. H., Jan 1 2014, In : Mathematics and Visualization. p. 239-247 9 p.

Research output: Contribution to journalConference article

Supervised Learning
Learning systems
Disorder
Machine Learning
Graph theory

How histone modifications change nucleosome stability - FRET studies on single molecules and in bulk

Tóth, K., Gansen, A., Hetey, S., Székvölgyi, L., Nordenskiöld, L. & Langowski, J., Jan 1 2014, In : Microscopy and Microanalysis. 20, 3, p. 1204-1205 2 p.

Research output: Contribution to journalConference article

Molecules
molecules

Protein interaction and transport maps of live cell nuclei using fluorescence correlation spectroscopy in a single plane illumination microscope

Krieger, J. W., Pernus, A., Brazda, P. & Langowski, J., Jan 1 2014, In : Microscopy and Microanalysis. 20, 3, p. 1196-1197 2 p.

Research output: Contribution to journalConference article

Microscopes
Lighting
Fluorescence
illumination
microscopes
4 Citations (Scopus)

Random matrix based uncertainty model for complex robotic systems

Sovizi, J., Alamdari, A., Das, S. & Krovi, V., Sep 22 2014, In : Proceedings - IEEE International Conference on Robotics and Automation. p. 4049-4054 6 p., 6907447.

Research output: Contribution to journalConference article

Robotics
Random variables
Manipulators
Jacobian matrices
Large scale systems
3 Citations (Scopus)

Rich club analysis of structural brain connectivity at 7 tesla versus 3 tesla

Dennis, E. L., Zhan, L., Jahanshad, N., Mueller, B. A., Jin, Y., Lenglet, C., Yacoub, E., Sapiro, G., Ugurbil, K., Harel, N., Toga, A., Lim, K. O. & Thompson, P. M., Jan 1 2014, In : Mathematics and Visualization. 0, p. 209-218 10 p.

Research output: Contribution to journalConference article

Brain
Connectivity
Impact strength
Vertex of a graph
High Angular Resolution
11 Citations (Scopus)

Tracheal extubation

Artime, C. A. & Hagberg, C., Jan 1 2014, In : Respiratory Care. 59, 6, p. 991-1005 15 p.

Research output: Contribution to journalConference article

Airway Extubation
Intubation
Artificial Respiration
Ventilator-Associated Pneumonia
Mortality

Using ontology fingerprints to disambiguate gene name entities in the biomedical literature

Chen, G., Zhao, J., Cohen, T., Tao, C., Sun, J., Xu, H., Bernstam, E. V., Lawson, A., Zeng, J., Johnson, A. M., Holla, V., Bailey, A. M., Meric-Bernstam, F. & Zheng, W. J., Jan 1 2014, In : CEUR Workshop Proceedings. 1327, 1 p.

Research output: Contribution to journalConference article

2013
2 Citations (Scopus)

An investigation into ultra-sensitive substituted leucomalachite dye derivatives for use in the PRESAGE® dosimeter

Alqathami, M., Adamovics, J., Benning, R. & Blencowe, A., Jan 1 2013, In : Journal of Physics: Conference Series. 444, 1, 012034.

Research output: Contribution to journalConference article

dosimeters
dyes
bromine
chlorine
sensitivity
8 Citations (Scopus)

Challenges in developing DDDAS based methodology for volcanic ash hazard analysis - Effect of numerical weather prediction variability and parameter estimation

Patra, A. K., Bursik, M., Dehn, J., Jones, M., Madankan, R., Morton, D., Pavolonis, M., Pitman, E. B., Pouget, S., Singh, T., Singla, P., Stefanescu, E. R. & Webley, P., Jan 1 2013, In : Procedia Computer Science. 18, p. 1871-1880 10 p.

Research output: Contribution to journalConference article

Ashes
Parameter estimation
Hazards
Satellite imagery
Data integration
1 Citations (Scopus)

Comprehensive quality assurance for base of skull IMRT

Thomas, A., O'Daniel, J., Adamovics, J., Ibbott, G. & Oldham, M., Jan 1 2013, In : Journal of Physics: Conference Series. 444, 1, 012050.

Research output: Contribution to journalConference article

skull
assurance
dosage
dosimeters
eclipses
23 Citations (Scopus)

Current status of scintillation dosimetry for megavoltage beams

Beaulieu, L., Goulet, M., Archambault, L. & Beddar, S., Jan 1 2013, In : Journal of Physics: Conference Series. 444, 1, 012013.

Research output: Contribution to journalConference article

scintillation
dosimeters
plastics
photometers
engineering
17 Citations (Scopus)

Enhancement of radiation effects by bismuth oxide nanoparticles for kilovoltage x-ray beams: A dosimetric study using a novel multi-compartment 3D radiochromic dosimeter

Alqathami, M., Blencowe, A., Yeo, U. J., Franich, R., Doran, S., Qiao, G. & Geso, M., Jan 1 2013, In : Journal of Physics: Conference Series. 444, 1, 012025.

Research output: Contribution to journalConference article

bismuth oxides
radiation effects
compartments
dosimeters
dosage
1 Citations (Scopus)

Investigation of 3D dosimetry for an anthropomorphic spine phantom

Grant, R., Ibbott, G., Yang, J. N., Adamovics, J. & Followill, D. S., Jan 1 2013, In : Journal of Physics: Conference Series. 444, 1, 012020.

Research output: Contribution to journalConference article

spine
dosimeters
inserts
dosage
histograms
1 Citations (Scopus)

Investigation of photon and proton overlapping fields in PRESAGE® dosimeters

Carroll, M., Ibbott, G., Grant, R., Gillin, M. & Adamovics, J., Jan 1 2013, In : Journal of Physics: Conference Series. 444, 1, 012059.

Research output: Contribution to journalConference article

dosimeters
dosage
protons
photons
irradiation

Ontocloud - A clinical information ontology based data integration system

Patrão, D. F. C., Brentani, H. B., Finger, M. & Wassermann, R., Jan 1 2013, In : CEUR Workshop Proceedings. 1041, p. 118-129 12 p.

Research output: Contribution to journalConference article

Data integration
Ontology
3 Citations (Scopus)

ROPES eye plaque dosimetry: Commissioning and verification of an ophthalmic brachytherapy treatment planning system

Poder, J., Annabell, N., Geso, M., Alqathami, M. & Corde, S., Jan 1 2013, In : Journal of Physics: Conference Series. 444, 1, 012102.

Research output: Contribution to journalConference article

simulators
dosimeters
planning
dosage
iodine 125
3 Citations (Scopus)

Searching for the low-energy resonances in the 12C( 12C,n)23Mg reaction cross section relevant for s-process nucleosynthesis

Bucher, B., Fang, X., Almaraz-Calderon, S., Alongi, A., Ayangeakaa, A. D., Beard, M., Best, A., Browne, J., Cahillane, C., Couder, M., Deboer, R., Kontos, A., Long, A., Lu, W., Lyons, S., Notani, M., Patel, D. C., Paul, N., Roberts, A., Robertson, D. & 5 othersSmith, K., Stech, E., Talwar, R., Tan, W. & Tang, X. D., Jan 1 2013, In : Journal of Physics: Conference Series. 420, 1, 012141.

Research output: Contribution to journalConference article

nuclear fusion
cross sections
extrapolation
stellar models
energy