The University of Texas MD Anderson Cancer Center

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  • Conference contribution

    Transcriptomic analysis by RNA-Seq and gene enrichment analysis

    Nixon, S. E., González-Peña, D., Lawson, M. A., McCusker, R. H., O'Connor, J. C., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 27-31 5 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Tumor cell-substrate stabilization mediated by integrins

    Patton, J. T., McIntire, L. V., Menter, D. G. & Nicolson, G. L., 1994, Materials Research Society Symposium Proceedings. Publ by Materials Research Society, p. 147-152 6 p. (Materials Research Society Symposium Proceedings; vol. 331).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    5 Scopus citations

  • Tumor localization in tissue microarrays using rotation invariant superpixel pyramids

    Akbar, S., Jordan, L., Thompson, A. M. & McKenna, S. J., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 1292-1295 4 p. 7164111. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    9 Scopus citations

  • Tumor Segmentation in Patients with Head and Neck Cancers Using Deep Learning Based-on Multi-modality PET/CT Images

    Naser, M. A., van Dijk, L. V., He, R., Wahid, K. A. & Fuller, C. D., 2021, Head and Neck Tumor Segmentation - First Challenge, HECKTOR 2020, Held in Conjunction with MICCAI 2020, Proceedings. Andrearczyk, V., Oreiller, V. & Depeursinge, A. (eds.). Springer Science and Business Media Deutschland GmbH, p. 85-98 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12603 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    15 Scopus citations

  • Two-photon-induced photoluminescence imaging of gold nanoshell's tumor biodistribution

    Park, J., Estrad, A., Schwartz, J. A., Diagaradjane, P., Krishnan, S., Coleman, C., Payne, J. D., Dunn, A. K. & Tunnell, J. W., 2009, Plasmonics in Biology and Medicine VI. 71920T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7192).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations

  • Two-stage multiscale adaptive regression methods for twin neuroimaging data

    Li, Y., Gilmore, J. H., Wang, J., Styner, M., Lin, W. & Zhu, H., 2011, Multimodal Brain Image Analysis - First International Workshop, MBIA 2011, Held in Conjunction with MICCAI 2011, Proceedings. p. 102-109 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7012 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Ultrahigh-resolution L(Y)SO detectors using PMT-quadrant-sharing for human & animal PET cameras

    Ramirez, R. A., Kim, S., Zhang, Y., Liu, S., Baghaei, H., Li, H., Wang, Y., Liu, J. & Wong, W. H., 2006, 2006 IEEE Nuclear Science Symposium - Conference Record. Institute of Electrical and Electronics Engineers Inc., p. 1865-1869 5 p. 4179370. (IEEE Nuclear Science Symposium Conference Record; vol. 3).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    7 Scopus citations

  • Ultra low dose CT for attenuation correction in PET/CT

    Colsher, J. G., Hsieh, J., Thibault, J. B., Lonn, A., Pan, T., Lokitz, S. J. & Turkington, T. G., 2008, 2008 IEEE Nuclear Science Symposium Conference Record, NSS/MIC 2008. p. 5506-5511 6 p. 4774499. (IEEE Nuclear Science Symposium Conference Record).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    19 Scopus citations

  • ULTRASONOGRAPHIC EVALUATION OF MUSCULAR INJURIES IN THE ATHLETE.

    Fornage, B. D., Touche, D. H., Jacob, M., Raguet, M. & Segal, P. M., 1981, Proceedings of the Annual Meeting of the American Institute of Ultrasound in Medicine. Am Inst of Ultrasound in Med, p. 77 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Ultrasound and photoacoustic imaging to monitor mesenchymal stem cells labeled with gold nanoparticles

    Nam, S. Y., Ricles, L. M., Sokolov, K., Suggs, L. J. & Emelianov, S. Y., 2011, Photons Plus Ultrasound: Imaging and Sensing 2011. 78991Z. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7899).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    5 Scopus citations

  • Ultrasound-based imaging of nanoparticles: From molecular and cellular imaging to therapy guidance

    Mallidi, S., Wang, B., Mehrmohammadi, M., Qu, M., Chen, Y. S., Joshi, P., Kim, S., Homan, K. A., Karpiouk, A. B., Smalling, R. W., Sokolov, K. & Emelianov, S. Y., 2009, 2009 IEEE International Ultrasonics Symposium and Short Courses, IUS 2009. 5441484. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    12 Scopus citations

  • Uncertainty analysis of energy harvesting systems

    Madankan, R., Karami, M. A. & Singla, P., 2014, 10th International Conference on Multibody Systems, Nonlinear Dynamics, and Control. American Society of Mechanical Engineers (ASME), (Proceedings of the ASME Design Engineering Technical Conference; vol. 6).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    7 Scopus citations

  • Uncertainty characterization in serial and parallel manipulators using random matrix theory

    Sovizi, J. & Krovi, V. N., 2013, 2013 IEEE International Conference on Automation Science and Engineering, CASE 2013. p. 312-317 6 p. 6654047. (IEEE International Conference on Automation Science and Engineering).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations

  • UNC-Utah NA-MIC DTI framework: Atlas based fiber tract analysis with application to a study of nicotine smoking addiction

    Verde, A. R., Berger, J. B., Gupta, A., Farzinfar, M., Kaiser, A., Chanon, V. W., Boettiger, C., Johnson, H., Matsui, J., Sharma, A., Goodlett, C., Shi, Y., Zhu, H., Gerig, G., Gouttard, S., Vachet, C. & Styner, M., 2013, Medical Imaging 2013: Image Processing. 86692D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8669).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    3 Scopus citations

  • Understanding scanner upgrade effects on brain integrity & connectivity measures

    Zhan, L., Jahanshad, N., Jin, Y., Nir, T. M., Leonardo, C. D., Bernstein, M. A., Borowski, B., Jack, C. R. & Thompson, P. M., Jul 29 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014. Institute of Electrical and Electronics Engineers Inc., p. 234-237 4 p. 6867852. (2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    6 Scopus citations

  • Understanding Tumor Micro Environment Using Graph Theory

    Rohail, K., Bashir, S., Ali, H., Alam, T., Khan, S., Wu, J., Chen, P. & Qureshi, R., 2023, Computer Vision – ACCV 2022 Workshops - 16th Asian Conference on Computer Vision, Revised Selected Papers. Zheng, Y., Keleş, H. Y. & Koniusz, P. (eds.). Springer Science and Business Media Deutschland GmbH, p. 90-101 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13848 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • U-Net Autoencoder for Edge-Preserved Denoising of Low Dose Computed Tomography Images: A Novel Technique

    Zubair, M., Md Rais, H. B. & Al-Tashi, Q., 2023, 2023 13th International Conference on Information Technology in Asia, CITA 2023. Institute of Electrical and Electronics Engineers Inc., p. 19-24 6 p. (2023 13th International Conference on Information Technology in Asia, CITA 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Unified tests for fine scale mapping and identifying sparse high-dimensional sequence associations

    Cao, S., Qin, H., Gossmann, A., Deng, H. W. & Wang, Y. P., Sep 9 2015, BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 241-249 9 p. (BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Unsupervised grow-cut: Cellular automata-based medical image segmentation

    Ghosh, P., Antani, S. K., Long, L. R. & Thoma, G. R., 2011, Proceedings - 2011 1st IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2011. p. 40-47 8 p. 6061452. (Proceedings - 2011 1st IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2011).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    36 Scopus citations

  • Unsupervised inference of arbor morphology progression for microglia from confocal microscope images

    Xu, Y., Savelonas, M., Qiu, P., Trett, K., Shain, W. & Roysam, B., 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 1356-1359 4 p. 6556784. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    5 Scopus citations

  • Unsupervised segmentation of lungs from chest radiographs

    Ghosh, P., Antani, S. K., Long, L. R. & Thoma, G. R., 2012, Medical Imaging 2012: Computer-Aided Diagnosis. Vol. 8315. 831532

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Use of gold nanoshells to mediate heating induced perfusion changes in prostate tumors

    Shetty, A., Elliott, A. M., Schwartz, J. A., Wang, J., Esparza-Coss, E., Klumpp, S., Taylor, B., Hazle, J. D. & Stafford, R. J., 2008, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 68420S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6842).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    7 Scopus citations

  • Using a spike-in experiment to evaluate analysis of LC-MS data

    Tuli, L., Tsai, T. H., Varghese, R. S., Cheema, A. & Ressom, H. W., 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010. p. 67-72 6 p. 5703775. (2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Using CSF as an internal quality assurance tool in diffusion tensor imaging studies of brain tumor

    Wang, J., Shen, Y., Degroot, J., Shen, Y. & Li, J., 2009, Medical Imaging 2009: Biomedical Applications in Molecular, Structural, and Functional Imaging. 726203. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7262).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Using cyber-infrastructure for dynamic data driven laser treatment of cancer

    Bajaj, C., Oden, J. T., Diller, K. R., Browne, J. C., Hazle, J., Babuška, I., Bass, J., Bidaut, L., Demkowicz, L., Elliott, A., Feng, Y., Fuentes, D., Kwon, B., Prudhomme, S., Stafford, R. J. & Zhang, Y., 2007, Computational Science - ICCS 2007 - 7th International Conference, Proceedings, Part I. Springer Verlag, p. 972-979 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4487 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    3 Scopus citations

  • Using directed information for influence discovery in interconnected dynamical systems

    Rao, A., Hero, A. O., States, D. J. & Engel, J. D., 2008, Advanced Signal Processing Algorithms, Architectures, and Implementations XVIII. 70740P. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7074).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    2 Scopus citations

  • UTH-CCB: The Participation of the SemEval 2015 Challenge - Task 14

    Xu, J., Zhang, Y., Wang, J., Wu, Y., Jiang, M., Soysal, E. & Xu, H., 2015, SemEval 2015 - 9th International Workshop on Semantic Evaluation, co-located with the 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, NAACL-HLT 2015 - Proceedings. Nakov, P., Zesch, T., Cer, D. & Jurgens, D. (eds.). Association for Computational Linguistics (ACL), p. 311-314 4 p. (SemEval 2015 - 9th International Workshop on Semantic Evaluation, co-located with the 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, NAACL-HLT 2015 - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    11 Scopus citations

  • UTHealth at SemEval-2016 task 12: An end-to-end system for temporal information extraction from clinical notes

    Lee, H. J., Zhang, Y., Xu, J., Moon, S., Wang, J., Wu, Y. & Xu, H., 2016, SemEval 2016 - 10th International Workshop on Semantic Evaluation, Proceedings. Association for Computational Linguistics (ACL), p. 1292-1297 6 p. (SemEval 2016 - 10th International Workshop on Semantic Evaluation, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    36 Scopus citations

  • Utilizing multiple particle tracking microrheology and traction force microscopy to monitor mechanical progression of differentiating mesenchymal stem cells

    McAndrews, K., McGrail, D. J., Quach, N. & Dawson, M. R., 2013, Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future. AIChE, p. 853-854 2 p. (Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Validation of a dual reporter system for in vivo heat-mediated HSP70 expression in prostate tumors

    Shetty, A., Najjar, A., Elliott, A. M., Springer, A., Stafford, R. J., Diller, K., Gelovani, J. & Hazle, J. D., 2008, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 68420T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6842).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Validation of GATE optical transportation with experimental single scintillator dual-end readout data

    Zhang, Y., Baghaei, H., Yan, H. & Wong, W. H., Mar 10 2016, 2014 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2014. Institute of Electrical and Electronics Engineers Inc., 7430830. (2014 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2014).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Variability assessment of LC-MS experiments and its application to experimental design and difference detection

    Zhao, Y., Tsai, T. H., Di Poto, C., Pannell, L. K., Tadesse, M. G. & Ressom, H. W., 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2012. p. 195-198 4 p. 6507762. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Visibility of microcalcifications in CCD-based cone beam CT: A preliminary study

    Shen, Y., Chen, L., Ge, S., Yi, Y., Han, T., Zhong, Y., Lai, C. J., Liu, X., Wang, T. & Shaw, C. C., 2009, Medical Imaging 2009: Physics of Medical Imaging. 72580M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7258).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Visualization and planning of neurosurgical interventions with straight access

    Navkar, N. V., Tsekos, N. V., Stafford, J. R., Weinberg, J. S. & Deng, Z., 2010, Information Processing in Computer-Assisted Interventions - First International Conference, IPCAI 2010, Proceedings. p. 1-11 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6135 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    33 Scopus citations

  • Volume and tissue composition preserving deformation of breast CT images to simulate breast compression in mammographic imaging

    Han, T., Chen, L., Lai, C. J., Liu, X., Shen, Y., Zhong, Y., Ge, S., Yi, Y., Wang, T. & Shaw, C. C., 2009, Medical Imaging 2009: Physics of Medical Imaging. 72580K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7258).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Voxel-based reconstruction combined with motion detection for slow rotating 4D CBCT

    Bergner, F., Berkus, T., Oelhafen, M., Kunz, P., Pan, T. & KachelrieB, M., 2008, 2008 IEEE Nuclear Science Symposium Conference Record, NSS/MIC 2008. p. 5107-5112 6 p. 4774386. (IEEE Nuclear Science Symposium Conference Record).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations

  • Voxel-wise group analysis of dti

    Liu, Z., Zhu, H., Marks, B. L., Katz, L. M., Goodlett, C. B., Gerig, G. & Styner, M., 2009, Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009. IEEE Computer Society, p. 807-810 4 p. 5193172. (Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    18 Scopus citations

  • Voxelwise spectral diffusional connectivity and its applications to Alzheimer's disease and intelligence prediction

    Li, J., Jin, Y., Shi, Y., Dinov, I. D., Wang, D. J., Toga, A. W. & Thompson, P. M., 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 1 ed. Springer Verlag, p. 655-662 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8149 LNCS, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    11 Scopus citations

  • White light oblique-incidence diffuse reflectance spectroscopy for classification of in vivo pigmented skin lesions

    Garcia-Uribe, A., Smith, E. B., Duvic, M. & Wang, L. V., 2007, Optical Interactions with Tissue and Cells XVIII. 64350L. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6435).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    2 Scopus citations

  • White matter integrity in traumatic brain injury: Effects of permissible fiber turning angle

    Dennis, E. L., Jin, Y., Kernan, C., Babikian, T., Mink, R., Babbitt, C., Johnson, J., Giza, C. C., Asarnow, R. F. & Thompson, P. M., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 930-933 4 p. 7164023. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    8 Scopus citations

  • Wide-field and high-resolution optical imaging for early detection of oral neoplasia

    Pierce, M. C., Schwarz, R. A., Rosbach, K., Roblyer, D., Muldoon, T., Williams, M. D., El-Naggar, A. K., Gillenwater, A. M. & Richards-Kortum, R., 2010, Photonic Therapeutics and Diagnostics VI. 75481U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7548).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Work status of individuals with advanced cancer

    Terhaar, A., Lee, J. W., Tevaarwerk, A., Sesto, M., Wiegmann, D. & Fisch, M., 2014, 2014 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2014. Human Factors an Ergonomics Society Inc., p. 649-653 5 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 2014-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • β laktamaz - li̇gand etki̇leşi̇mi̇ni̇n di̇nami̇k anali̇zi̇

    Translated title of the contribution: Dynamic analysis of β lactamase ligand interactionKanlikiliçer, P., Büdeyri, N., Akbulut, B. S., Hortaçsu, A. & Özkirimli Ölmez, E., 2009, Proceedings of 2009 14th National Biomedical Engineering Meeting, BIYOMUT 2009. 5130306. (Proceedings of 2009 14th National Biomedical Engineering Meeting, BIYOMUT 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution